RNA–Protein interactions for RNA: ENST00000379446.9

NEDD9-202, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NEDD9, Length 4,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-202ENST00000379446 NBPF8Q3BBV2 869 aa8.59□□□□□ -1.03
NEDD9-202ENST00000379446 NBPF14Q5TI25 921 aa8.59□□□□□ -1.03
NEDD9-202ENST00000379446 FAM9BQ8IZU0 186 aa8.59□□□□□ -1.03
NEDD9-202ENST00000379446 RRBP1Q9P2E9 1410 aaKnown RBP8.59□□□□□ -1.03
NEDD9-202ENST00000379446 SYNJ2O15056 1496 aa8.59□□□□□ -1.03
NEDD9-202ENST00000379446 ERICH3Q5RHP9 1530 aa8.59□□□□□ -1.03
NEDD9-202ENST00000379446 RAPGEF4Q8WZA2 1011 aa8.59□□□□□ -1.04
NEDD9-202ENST00000379446 PEG3Q9GZU2 1588 aa8.58□□□□□ -1.04
NEDD9-202ENST00000379446 SENP3-EIF4A1A0A087X0R7 540 aa8.58□□□□□ -1.04
NEDD9-202ENST00000379446 FRAT2O75474 233 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-202ENST00000379446 GRM1Q13255 1194 aa8.58□□□□□ -1.04
NEDD9-202ENST00000379446 C16orf71Q8IYS4 520 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-202ENST00000379446 TERF2IPQ9NYB0 399 aa8.58□□□□□ -1.04
NEDD9-202ENST00000379446 NLRP6P59044 892 aa8.57□□□□□ -1.04
NEDD9-202ENST00000379446 FBXW7Q969H0 707 aa8.57□□□□□ -1.04
NEDD9-202ENST00000379446 DDX54Q8TDD1 881 aaKnown RBP8.57□□□□□ -1.04
NEDD9-202ENST00000379446 TOPBP1Q92547 1522 aa8.56□□□□□ -1.04
NEDD9-202ENST00000379446 ABTB2Q8N961 1025 aa8.56□□□□□ -1.04
NEDD9-202ENST00000379446 WWC3Q9ULE0 1092 aa8.56□□□□□ -1.04
NEDD9-202ENST00000379446 NCKAP5LQ9HCH0 1330 aa8.56□□□□□ -1.04
NEDD9-202ENST00000379446 MORC1Q86VD1 984 aa8.56□□□□□ -1.04
NEDD9-202ENST00000379446 ZC3H6P61129 1189 aaKnown RBP8.55□□□□□ -1.04
NEDD9-202ENST00000379446 C1orf141Q5JVX7 400 aa8.55□□□□□ -1.04
NEDD9-202ENST00000379446 CWC22Q9HCG8 908 aaKnown RBP8.55□□□□□ -1.04
NEDD9-202ENST00000379446 ZNF608Q9ULD9 1512 aaPredicted RBP8.55□□□□□ -1.04
NEDD9-202ENST00000379446 CADPS2Q86UW7 1296 aa8.55□□□□□ -1.04
NEDD9-202ENST00000379446 NGEFQ8N5V2 710 aa8.55□□□□□ -1.04
NEDD9-202ENST00000379446 CHMP3Q9Y3E7 222 aa8.55□□□□□ -1.04
NEDD9-202ENST00000379446 UACAQ9BZF9 1416 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 FOXO3O43524 673 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 TMF1P82094 1093 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 TAF7LQ5H9L4 462 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 CFTRP13569 1480 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 AKNAQ7Z591 1439 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 NCBP3Q53F19 620 aaKnown RBP8.54□□□□□ -1.04
NEDD9-202ENST00000379446 TAOK2Q9UL54 1235 aa8.54□□□□□ -1.04
NEDD9-202ENST00000379446 TTC5Q8N0Z6 440 aa8.53□□□□□ -1.04
NEDD9-202ENST00000379446 LRRC9Q6ZRR7 1453 aa8.53□□□□□ -1.04
NEDD9-202ENST00000379446 OS9Q13438 667 aaPredicted RBP8.53□□□□□ -1.04
NEDD9-202ENST00000379446 RBM42Q9BTD8 480 aaKnown RBP8.53□□□□□ -1.04
NEDD9-202ENST00000379446 LAMC3Q9Y6N6 1575 aa8.53□□□□□ -1.04
NEDD9-202ENST00000379446 ARHGAP5Q13017 1502 aa8.53□□□□□ -1.04
NEDD9-202ENST00000379446 MSH6P52701 1360 aa8.53□□□□□ -1.04
NEDD9-202ENST00000379446 MRS2Q9HD23 443 aa8.52□□□□□ -1.04
NEDD9-202ENST00000379446 FBXO31Q5XUX0 539 aaPredicted RBP8.52□□□□□ -1.05
NEDD9-202ENST00000379446 POLA1P09884 1462 aaPredicted RBP8.52□□□□□ -1.05
NEDD9-202ENST00000379446 ZNF644Q9H582 1327 aaPredicted RBP8.52□□□□□ -1.05
NEDD9-202ENST00000379446 WASHC2AQ641Q2 1341 aa8.52□□□□□ -1.05
NEDD9-202ENST00000379446 COG3Q96JB2 828 aa8.52□□□□□ -1.05
NEDD9-202ENST00000379446 FAM177BA6PVY3 158 aa8.51□□□□□ -1.05
NEDD9-202ENST00000379446 TEX14Q8IWB6 1497 aa8.51□□□□□ -1.05
NEDD9-202ENST00000379446 ZRANB1Q9UGI0 708 aa8.51□□□□□ -1.05
NEDD9-202ENST00000379446 HSPA5P11021 654 aaKnown RBP8.51□□□□□ -1.05
NEDD9-202ENST00000379446 CC2D1BQ5T0F9 858 aaKnown RBP8.51□□□□□ -1.05
NEDD9-202ENST00000379446 MYH16Q9H6N6 1097 aa8.51□□□□□ -1.05
NEDD9-202ENST00000379446 PRDM2Q13029 1718 aa8.51□□□□□ -1.05
NEDD9-202ENST00000379446 TMEM132EQ6IEE7 984 aa8.5□□□□□ -1.05
NEDD9-202ENST00000379446 TEFQ10587 303 aa8.5□□□□□ -1.05
NEDD9-202ENST00000379446 CCER2I3L3R5 266 aa8.5□□□□□ -1.05
NEDD9-202ENST00000379446 GPR162Q16538 588 aa8.5□□□□□ -1.05
NEDD9-202ENST00000379446 TIMELESSQ9UNS1 1208 aa8.5□□□□□ -1.05
NEDD9-202ENST00000379446 WDR97A6NE52 1622 aa8.5□□□□□ -1.05
NEDD9-202ENST00000379446 POLD1P28340 1107 aa8.49□□□□□ -1.05
NEDD9-202ENST00000379446 BAG6P46379 1132 aa8.49□□□□□ -1.05
NEDD9-202ENST00000379446 BIVM-ERCC5R4GMW8 1640 aa8.49□□□□□ -1.05
NEDD9-202ENST00000379446 TIAM1Q13009 1591 aa8.49□□□□□ -1.05
NEDD9-202ENST00000379446 PLB1Q6P1J6 1458 aa8.48□□□□□ -1.05
NEDD9-202ENST00000379446 SLC52A1Q9NWF4 448 aa8.47□□□□□ -1.05
NEDD9-202ENST00000379446 HMGXB3Q12766 1538 aa8.47□□□□□ -1.05
NEDD9-202ENST00000379446 NLRP13Q86W25 1043 aa8.47□□□□□ -1.05
NEDD9-202ENST00000379446 DENND4BO75064 1496 aaPredicted RBP8.47□□□□□ -1.05
NEDD9-202ENST00000379446 TCERG1O14776 1098 aaKnown RBP8.46□□□□□ -1.05
NEDD9-202ENST00000379446 PNNQ9H307 717 aaKnown RBP8.46□□□□□ -1.05
NEDD9-202ENST00000379446 ZNF219Q9P2Y4 722 aaPredicted RBP8.46□□□□□ -1.05
NEDD9-202ENST00000379446 B4GALNT3Q6L9W6 998 aa8.46□□□□□ -1.06
NEDD9-202ENST00000379446 CCAR1Q8IX12 1150 aaKnown RBP8.46□□□□□ -1.06
NEDD9-202ENST00000379446 CERKQ8TCT0 537 aa8.46□□□□□ -1.06
NEDD9-202ENST00000379446 CLEC11AQ9Y240 323 aa8.46□□□□□ -1.06
NEDD9-202ENST00000379446 RXRBP28702 533 aa8.46□□□□□ -1.06
NEDD9-202ENST00000379446 ANP32AP39687 249 aaKnown RBP8.46□□□□□ -1.06
NEDD9-202ENST00000379446 AMOTL2Q9Y2J4 779 aa8.46□□□□□ -1.06
NEDD9-202ENST00000379446 U2AF1L5P0DN76 240 aaPredicted RBP8.45□□□□□ -1.06
NEDD9-202ENST00000379446 HMGB2P26583 209 aaKnown RBP8.45□□□□□ -1.06
NEDD9-202ENST00000379446 U2AF1Q01081 240 aaKnown RBP eCLIP8.45□□□□□ -1.061e-6■■□□□ 11.6
NEDD9-202ENST00000379446 FGD6Q6ZV73 1430 aa8.45□□□□□ -1.06
NEDD9-202ENST00000379446 GORABQ5T7V8 394 aa8.45□□□□□ -1.06
NEDD9-202ENST00000379446 MAPKBP1O60336 1514 aa8.45□□□□□ -1.06
NEDD9-202ENST00000379446 LRRC59Q96AG4 307 aaKnown RBP8.45□□□□□ -1.06
NEDD9-202ENST00000379446 UHRF1BP1Q6BDS2 1440 aa8.45□□□□□ -1.06
NEDD9-202ENST00000379446 L3MBTL2Q969R5 705 aa8.44□□□□□ -1.06
NEDD9-202ENST00000379446 BEGAINQ9BUH8 593 aa8.44□□□□□ -1.06
NEDD9-202ENST00000379446 MAGI1Q96QZ7 1491 aaPredicted RBP8.44□□□□□ -1.06
NEDD9-202ENST00000379446 KCNJ4P48050 445 aa8.44□□□□□ -1.06
NEDD9-202ENST00000379446 MPHOSPH9Q99550 1183 aa8.44□□□□□ -1.06
NEDD9-202ENST00000379446 ASXL2Q76L83 1435 aa8.44□□□□□ -1.06
NEDD9-202ENST00000379446 KIF15Q9NS87 1388 aa8.43□□□□□ -1.06
NEDD9-202ENST00000379446 EVC2Q86UK5 1308 aa8.43□□□□□ -1.06
NEDD9-202ENST00000379446 PCF11O94913 1555 aaKnown RBP8.43□□□□□ -1.06
NEDD9-202ENST00000379446 SAMD1Q6SPF0 538 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-202ENST00000379446 BICDL1Q6ZP65 573 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms