RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 INO80BQ9C086 356 aaPredicted RBP28.67■■■□□ 2.18
TRIM28-204ENST00000594806 AGO3Q9H9G7 860 aaKnown RBP28.67■■■□□ 2.18
TRIM28-204ENST00000594806 FBXO2Q9UK22 296 aaPredicted RBP28.67■■■□□ 2.18
TRIM28-204ENST00000594806 ATP6V1DQ9Y5K8 247 aa28.67■■■□□ 2.18
TRIM28-204ENST00000594806 PPP6R2O75170 966 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 EYA4O95677 639 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 MARCKSP29966 332 aaPredicted RBP28.66■■■□□ 2.18
TRIM28-204ENST00000594806 GPR153Q6NV75 609 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 PADI6Q6TGC4 694 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 RHPN2Q8IUC4 686 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 KRI1Q8N9T8 703 aaKnown RBP28.66■■■□□ 2.18
TRIM28-204ENST00000594806 NLRP7Q8WX94 980 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 SCLT1Q96NL6 688 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 GCOM2Q9BZD3 368 aaPredicted RBP28.66■■■□□ 2.18
TRIM28-204ENST00000594806 CCSER1Q9C0I3 900 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 CDHR5Q9HBB8 845 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 XPNPEP1Q9NQW7 623 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 PADI3Q9ULW8 664 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 COL4A3BPQ9Y5P4 624 aa28.66■■■□□ 2.18
TRIM28-204ENST00000594806 ATP2A2P16615 1042 aaKnown RBP28.65■■■□□ 2.18
TRIM28-204ENST00000594806 CD52P31358 61 aa28.65■■■□□ 2.18
TRIM28-204ENST00000594806 WDR5P61964 334 aaKnown RBP28.65■■■□□ 2.18
TRIM28-204ENST00000594806 PRPF31Q8WWY3 499 aaKnown RBP28.65■■■□□ 2.18
TRIM28-204ENST00000594806 TMEM143Q96AN5 459 aa28.65■■■□□ 2.18
TRIM28-204ENST00000594806 BHMT2Q9H2M3 363 aa28.65■■■□□ 2.18
TRIM28-204ENST00000594806 A0A087WWV3 80 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 SPTLC2O15270 562 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 DARSP14868 501 aaKnown RBP28.64■■■□□ 2.18
TRIM28-204ENST00000594806 CYP11B2P19099 503 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 POU5F1BQ06416 359 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 TCTN1Q2MV58 587 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 TMEM40Q8WWA1 233 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 CSRNP2Q9H175 543 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 TFIP11Q9UBB9 837 aaKnown RBP28.64■■■□□ 2.18
TRIM28-204ENST00000594806 ZDHHC9Q9Y397 364 aa28.64■■■□□ 2.18
TRIM28-204ENST00000594806 NOC2LQ9Y3T9 749 aaKnown RBP28.64■■■□□ 2.18
TRIM28-204ENST00000594806 USO1O60763 962 aaKnown RBP28.63■■■□□ 2.17
TRIM28-204ENST00000594806 AMHP03971 560 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 ARL2P36404 184 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 NUCB2P80303 420 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 GRIN1Q05586 938 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 TMEM119Q4V9L6 283 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 PNMA5Q96PV4 448 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 PPP1R16BQ96T49 567 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 ERVK-5Q9HDB9 667 aa28.63■■■□□ 2.17
TRIM28-204ENST00000594806 ANP32AP39687 249 aaKnown RBP28.62■■■□□ 2.17
TRIM28-204ENST00000594806 TXLNAP40222 546 aa28.62■■■□□ 2.17
TRIM28-204ENST00000594806 FXR1P51114 621 aaKnown RBP eCLIP28.62■■■□□ 2.172e-9■■■■□ 22.7
TRIM28-204ENST00000594806 LAMTOR4Q0VGL1 99 aa28.62■■■□□ 2.17
TRIM28-204ENST00000594806 NFX1Q12986 1120 aaKnown RBP28.62■■■□□ 2.17
TRIM28-204ENST00000594806 GRB10Q13322 594 aa28.62■■■□□ 2.17
TRIM28-204ENST00000594806 TFDP1Q14186 410 aa28.62■■■□□ 2.17
TRIM28-204ENST00000594806 ZRSR1Q15695 479 aaKnown RBP28.62■■■□□ 2.17
TRIM28-204ENST00000594806 KCNG4Q8TDN1 519 aa28.62■■■□□ 2.17
TRIM28-204ENST00000594806 BMP2KQ9NSY1 1161 aaPredicted RBP28.62■■■□□ 2.17
TRIM28-204ENST00000594806 DAXXQ9UER7 740 aaPredicted RBP28.62■■■□□ 2.17
TRIM28-204ENST00000594806 ST3GAL5Q9UNP4 418 aa28.62■■■□□ 2.17
TRIM28-204ENST00000594806 A0A087WZ62 844 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 E9PMD0 336 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 RAB30Q15771 203 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 SRGAP1Q7Z6B7 1085 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 FAM228AQ86W67 206 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 NLRP4Q96MN2 994 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 FDXACB1Q9BRP7 624 aaPredicted RBP28.61■■■□□ 2.17
TRIM28-204ENST00000594806 CCDC39Q9UFE4 941 aa28.61■■■□□ 2.17
TRIM28-204ENST00000594806 SFPQP23246 707 aaKnown RBP eCLIP28.6■■■□□ 2.17
TRIM28-204ENST00000594806 PCBP1Q15365 356 aaKnown RBP eCLIP28.6■■■□□ 2.178e-11■■■□□ 15.8
TRIM28-204ENST00000594806 HERC6Q8IVU3 1022 aa28.6■■■□□ 2.17
TRIM28-204ENST00000594806 RASSF8Q8NHQ8 419 aa28.6■■■□□ 2.17
TRIM28-204ENST00000594806 TIPINQ9BVW5 301 aa28.6■■■□□ 2.17
TRIM28-204ENST00000594806 RNF216Q9NWF9 866 aaPredicted RBP28.6■■■□□ 2.17
TRIM28-204ENST00000594806 KCND2Q9NZV8 630 aa28.6■■■□□ 2.17
TRIM28-204ENST00000594806 SOX1O00570 391 aaPredicted RBP28.59■■■□□ 2.17
TRIM28-204ENST00000594806 ENPP3O14638 875 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 DNM1Q05193 864 aaKnown RBP28.59■■■□□ 2.17
TRIM28-204ENST00000594806 KSR1Q8IVT5 923 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 SYT2Q8N9I0 419 aaPredicted RBP28.59■■■□□ 2.17
TRIM28-204ENST00000594806 CLIC6Q96NY7 704 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 NFKBIZQ9BYH8 718 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 POLR3FQ9H1D9 316 aaPredicted RBP28.59■■■□□ 2.17
TRIM28-204ENST00000594806 TSPYL2Q9H2G4 693 aaPredicted RBP28.59■■■□□ 2.17
TRIM28-204ENST00000594806 IFT122Q9HBG6 1241 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 MSRAQ9UJ68 235 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 PCDHA11Q9Y5I1 949 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 TTC3P53804 2025 aa28.59■■■□□ 2.17
TRIM28-204ENST00000594806 LOC101059915A0A1B0GWI6 518 aaPredicted RBP28.58■■■□□ 2.17
TRIM28-204ENST00000594806 CUTAO60888 179 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 SRGAP2CP0DJJ0 459 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 PHKA2P46019 1235 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 DEFB103AP81534 67 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 FOXD4L6Q3SYB3 417 aaPredicted RBP28.58■■■□□ 2.17
TRIM28-204ENST00000594806 FOXD4L3Q6VB84 417 aaPredicted RBP28.58■■■□□ 2.17
TRIM28-204ENST00000594806 LIN28BQ6ZN17 250 aaKnown RBP eCLIP28.58■■■□□ 2.175e-12■□□□□ 8.5
TRIM28-204ENST00000594806 KCNK18Q7Z418 384 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 IFNLR1Q8IU57 520 aaPredicted RBP28.58■■■□□ 2.17
TRIM28-204ENST00000594806 RNF149Q8NC42 400 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 SYMPKQ92797 1274 aaKnown RBP28.58■■■□□ 2.17
TRIM28-204ENST00000594806 KIFAP3Q92845 792 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 TMX1Q9H3N1 280 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 C1orf112Q9NSG2 853 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms