RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 IGKV6-21A0A0C4DH24 114 aa22.85■■□□□ 1.25
SS18-224ENST00000584083 SARSP49591 514 aaKnown RBP22.85■■□□□ 1.25
SS18-224ENST00000584083 POLGP54098 1239 aaPredicted RBP22.85■■□□□ 1.25
SS18-224ENST00000584083 CDC42EP1Q00587 391 aa22.85■■□□□ 1.25
SS18-224ENST00000584083 XKR9Q5GH70 373 aa22.85■■□□□ 1.25
SS18-224ENST00000584083 ZNF579Q8NAF0 562 aaKnown RBP22.85■■□□□ 1.25
SS18-224ENST00000584083 SLC7A3Q8WY07 619 aa22.85■■□□□ 1.25
SS18-224ENST00000584083 RGS18Q9NS28 235 aa22.85■■□□□ 1.25
SS18-224ENST00000584083 RNF216Q9NWF9 866 aaPredicted RBP22.85■■□□□ 1.25
SS18-224ENST00000584083 NOL7Q9UMY1 257 aaKnown RBP22.85■■□□□ 1.25
SS18-224ENST00000584083 ARID2Q68CP9 1835 aa22.85■■□□□ 1.25
SS18-224ENST00000584083 SLITRK3O94933 977 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 DARSP14868 501 aaKnown RBP22.84■■□□□ 1.25
SS18-224ENST00000584083 TTC38Q5R3I4 469 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 SLC24A5Q71RS6 500 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 RHPN2Q8IUC4 686 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 EXOC8Q8IYI6 725 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 NEK9Q8TD19 979 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 ZNF689Q96CS4 500 aaPredicted RBP22.84■■□□□ 1.25
SS18-224ENST00000584083 GCOM2Q9BZD3 368 aaPredicted RBP22.84■■□□□ 1.25
SS18-224ENST00000584083 LMCD1Q9NZU5 365 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 PPME1Q9Y570 386 aa22.84■■□□□ 1.25
SS18-224ENST00000584083 ZSCAN20P17040 1043 aaPredicted RBP22.83■■□□□ 1.25
SS18-224ENST00000584083 CTNNB1P35222 781 aa22.83■■□□□ 1.25
SS18-224ENST00000584083 RFC5P40937 340 aa22.83■■□□□ 1.25
SS18-224ENST00000584083 GPM6BQ13491 265 aa22.83■■□□□ 1.25
SS18-224ENST00000584083 PAN2Q504Q3 1202 aaKnown RBP22.83■■□□□ 1.25
SS18-224ENST00000584083 CMTR2Q8IYT2 770 aaKnown RBP22.83■■□□□ 1.25
SS18-224ENST00000584083 CRIPAKQ8N1N5 446 aa22.83■■□□□ 1.25
SS18-224ENST00000584083 RC3H2Q9HBD1 1191 aaKnown RBP22.83■■□□□ 1.25
SS18-224ENST00000584083 BMP2KQ9NSY1 1161 aaPredicted RBP22.83■■□□□ 1.25
SS18-224ENST00000584083 UNC80Q8N2C7 3258 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 A0A087WZ62 844 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 POTEMA6NI47 508 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 C9IYK1 514 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 ZBTB39O15060 712 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 CSDE1O75534 798 aaKnown RBP22.82■■□□□ 1.24
SS18-224ENST00000584083 OR52Z1P0C646 297 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 FGFR4P22455 802 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 TRAPPC10P48553 1259 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 ORC2Q13416 577 aaPredicted RBP22.82■■□□□ 1.24
SS18-224ENST00000584083 DSC3Q14574 896 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 KSR1Q8IVT5 923 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 NLRP4Q96MN2 994 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 HSD17B14Q9BPX1 270 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 FDXACB1Q9BRP7 624 aaPredicted RBP22.82■■□□□ 1.24
SS18-224ENST00000584083 DHX33Q9H6R0 707 aaKnown RBP22.82■■□□□ 1.24
SS18-224ENST00000584083 THEGQ9P2T0 379 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 RWDD3Q9Y3V2 267 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 A0A0C4DFX4 3053 aa22.82■■□□□ 1.24
SS18-224ENST00000584083 DLL1O00548 723 aa22.81■■□□□ 1.24
SS18-224ENST00000584083 U2AF2P26368 475 aaKnown RBP eCLIP22.81■■□□□ 1.241e-7■■■□□ 18
SS18-224ENST00000584083 TECP42680 631 aa22.81■■□□□ 1.24
SS18-224ENST00000584083 GATMP50440 423 aa22.81■■□□□ 1.24
SS18-224ENST00000584083 MCTP1Q6DN14 999 aa22.81■■□□□ 1.24
SS18-224ENST00000584083 ZNF410Q86VK4 478 aa22.81■■□□□ 1.24
SS18-224ENST00000584083 TMEM143Q96AN5 459 aa22.81■■□□□ 1.24
SS18-224ENST00000584083 CCDC43Q96MW1 224 aaKnown RBP22.81■■□□□ 1.24
SS18-224ENST00000584083 FNDC1Q4ZHG4 1894 aaPredicted RBP22.81■■□□□ 1.24
SS18-224ENST00000584083 H3BNC9 293 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 GJB2P29033 226 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 BMPR1AP36894 532 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 EMC2Q15006 297 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 PTPROQ16827 1216 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 PSPC1Q8WXF1 523 aaKnown RBP22.8■■□□□ 1.24
SS18-224ENST00000584083 CLP1Q92989 425 aaKnown RBP22.8■■□□□ 1.24
SS18-224ENST00000584083 INO80BQ9C086 356 aaPredicted RBP22.8■■□□□ 1.24
SS18-224ENST00000584083 ATP6V0A4Q9HBG4 840 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 ANKEF1Q9NU02 776 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 SMC3Q9UQE7 1217 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 COL4A3BPQ9Y5P4 624 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 MRPL42Q9Y6G3 142 aaKnown RBP22.8■■□□□ 1.24
SS18-224ENST00000584083 KIAA1671Q9BY89 1806 aa22.8■■□□□ 1.24
SS18-224ENST00000584083 H3BQV1 296 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 GAS2O43903 313 aaKnown RBP22.79■■□□□ 1.24
SS18-224ENST00000584083 LYPLA2O95372 231 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 RB1P06400 928 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 FAM189BP81408 668 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 NBR1Q14596 966 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 TCP11Q8WWU5 503 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 PRPF31Q8WWY3 499 aaKnown RBP22.79■■□□□ 1.24
SS18-224ENST00000584083 MRPL38Q96DV4 380 aaKnown RBP22.79■■□□□ 1.24
SS18-224ENST00000584083 BACH2Q9BYV9 841 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 TMEM161AQ9NX61 479 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.79■■□□□ 1.24
SS18-224ENST00000584083 REV3LO60673 3130 aa22.79■■□□□ 1.24
SS18-224ENST00000584083 SRGAP2CP0DJJ0 459 aa22.78■■□□□ 1.24
SS18-224ENST00000584083 SFPQP23246 707 aaKnown RBP eCLIP22.78■■□□□ 1.24
SS18-224ENST00000584083 FAM102BQ5T8I3 360 aa22.78■■□□□ 1.24
SS18-224ENST00000584083 ERMNQ8TAM6 284 aa22.78■■□□□ 1.24
SS18-224ENST00000584083 PIGOQ8TEQ8 1089 aa22.78■■□□□ 1.24
SS18-224ENST00000584083 ATXN2LQ8WWM7 1075 aaKnown RBP22.78■■□□□ 1.24
SS18-224ENST00000584083 MTRQ99707 1265 aa22.78■■□□□ 1.24
SS18-224ENST00000584083 C11orf84Q9BUA3 381 aaPredicted RBP22.78■■□□□ 1.24
SS18-224ENST00000584083 ELAC1Q9H777 363 aaKnown RBP22.78■■□□□ 1.24
SS18-224ENST00000584083 A0A087WWV3 80 aa22.77■■□□□ 1.24
SS18-224ENST00000584083 TBKBP1A7MCY6 615 aa22.77■■□□□ 1.24
SS18-224ENST00000584083 C5orf67F2Z3F1 127 aa22.77■■□□□ 1.24
SS18-224ENST00000584083 LINC00271P0C7V0 271 aa22.77■■□□□ 1.24
SS18-224ENST00000584083 LAMTOR4Q0VGL1 99 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 176.1 ms