RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ATP6V1G3Q96LB4 118 aa14.68□□□□□ -0.06
SHMT2-222ENST00000555774 CSRNP1Q96S65 589 aa14.68□□□□□ -0.06
SHMT2-222ENST00000555774 SYT11Q9BT88 431 aa14.68□□□□□ -0.06
SHMT2-222ENST00000555774 TDRD3Q9H7E2 651 aaKnown RBP14.68□□□□□ -0.06
SHMT2-222ENST00000555774 AGPAT3Q9NRZ7 376 aa14.68□□□□□ -0.06
SHMT2-222ENST00000555774 DNAJC12Q9UKB3 198 aa14.68□□□□□ -0.06
SHMT2-222ENST00000555774 AMFRQ9UKV5 643 aa14.68□□□□□ -0.06
SHMT2-222ENST00000555774 ATXN2Q99700 1313 aaKnown RBP14.68□□□□□ -0.06
SHMT2-222ENST00000555774 VIL1P09327 827 aaKnown RBP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 GALCP54803 685 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 RNASE9P60153 205 aaKnown RBP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 MTMR3Q13615 1198 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 CEP55Q53EZ4 464 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 MAATS1Q7Z4T9 603 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 OLIG1Q8TAK6 271 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 BCAS4Q8TDM0 211 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 TMEM174Q8WUU8 243 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 TMEM51Q9NW97 253 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 KRIT1O00522 736 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 SART1O43290 800 aaKnown RBP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 CFBP00751 764 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 KRT14P02533 472 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 ECHS1P30084 290 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 ALCAMQ13740 583 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 RRP1BQ14684 758 aaKnown RBP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 GJB7Q6PEY0 223 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 B3GNT9Q6UX72 402 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 DAAM2Q86T65 1068 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 FAM160B2Q86V87 743 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 SPATS2Q86XZ4 545 aaKnown RBP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 PPM1EQ8WY54 764 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 TEKT3Q9BXF9 490 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 INTS2Q9H0H0 1204 aaKnown RBP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.67□□□□□ -0.06
SHMT2-222ENST00000555774 TMOD2Q9NZR1 351 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 APEX2Q9UBZ4 518 aa14.67□□□□□ -0.06
SHMT2-222ENST00000555774 GOLGA6L10A6NI86 522 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 SFI1A8K8P3 1242 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 H0YIN7 160 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 MAPTP10636 758 aaKnown RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 TAL1P17542 331 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 HLTFQ14527 1009 aaKnown RBP eCLIP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 DRAP1Q14919 205 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 ARFGAP2Q8N6H7 521 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 CTNNBL1Q8WYA6 563 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 SEC14L1Q92503 715 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 STRA6Q9BX79 667 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 DEFB129Q9H1M3 183 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 SLX4Q8IY92 1834 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 SCN9AQ15858 1988 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 CHMP2AO43633 222 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 PPP1R37O75864 691 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 NR1D1P20393 614 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 CCT5P48643 541 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 MYL7Q01449 175 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 ZC2HC1CQ53FD0 456 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 SUPT20HQ8NEM7 779 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 NAP1L3Q99457 506 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 RIT2Q99578 217 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 ZNF577Q9BSK1 485 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 BCAS3Q9H6U6 928 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 QTRT2Q9H974 415 aaKnown RBP14.66□□□□□ -0.06
SHMT2-222ENST00000555774 TMBIM4Q9HC24 238 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 FAM114A2Q9NRY5 505 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 PLAAQ9Y263 795 aa14.66□□□□□ -0.06
SHMT2-222ENST00000555774 RBBP6Q7Z6E9 1792 aaKnown RBP14.65□□□□□ -0.06
SHMT2-222ENST00000555774 A0A087WUV0 522 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-222ENST00000555774 CPP00450 1065 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 HADHBP55084 474 aaKnown RBP14.65□□□□□ -0.06
SHMT2-222ENST00000555774 PPATQ06203 517 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 KIF22Q14807 665 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 SPDYCQ5MJ68 293 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 ODR4Q5SWX8 454 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 B4GALNT4Q76KP1 1039 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 SPICE1Q8N0Z3 855 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 GPR88Q9GZN0 384 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 UNC45AQ9H3U1 944 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 GOLPH3Q9H4A6 298 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 PLEKHA4Q9H4M7 779 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 ARHGEF35A5YM69 484 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 PLSCR1O15162 318 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 P4HA2O15460 535 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 POLD1P28340 1107 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 BFSP1Q12934 665 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 TCEAL1Q15170 157 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 RUFY4Q6ZNE9 571 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 CNKSR1Q969H4 720 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 PRMT6Q96LA8 375 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-222ENST00000555774 AP1M1Q9BXS5 423 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 CARD9Q9H257 536 aa14.65□□□□□ -0.06
SHMT2-222ENST00000555774 HSD17B3P37058 310 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 ECE1P42892 770 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 BIRC3Q13489 604 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CBWD6Q4V339 395 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CBWD3Q5JTY5 395 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CBWD5Q5RIA9 395 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 KCTD16Q68DU8 428 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 GLYCTKQ8IVS8 523 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 C12orf56Q8IXR9 622 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 SH2D3CQ8N5H7 860 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms