RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NFS1Q9Y697 457 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 MYH6P13533 1939 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 LINGO3P0C6S8 592 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 IDEP14735 1019 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 RASA1P20936 1047 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 IREB2P48200 963 aaKnown RBP5.71□□□□□ -1.49
USP28-213ENST00000544967 CCDC15Q0P6D6 951 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 TRIM29Q14134 588 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 VGLL4Q14135 290 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 PPP2R5BQ15173 497 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 CFAP221Q4G0U5 840 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 ARHGAP22Q7Z5H3 698 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 NOSTRINQ8IVI9 506 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 STK11IPQ8N1F8 1099 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 AIDAQ96BJ3 306 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 IFT74Q96LB3 600 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 SEC62Q99442 399 aaKnown RBP5.71□□□□□ -1.49
USP28-213ENST00000544967 NUP88Q99567 741 aaPredicted RBP5.71□□□□□ -1.49
USP28-213ENST00000544967 TSC22D3Q99576 134 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 ALG1Q9BT22 464 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 LRRC1Q9BTT6 524 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 FAM129AQ9BZQ8 928 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 NSRP1Q9H0G5 558 aaKnown RBP5.71□□□□□ -1.49
USP28-213ENST00000544967 ARMT1Q9H993 441 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 PAPOLBQ9NRJ5 636 aaKnown RBP5.71□□□□□ -1.49
USP28-213ENST00000544967 CIDEBQ9UHD4 219 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 SERPINB13Q9UIV8 391 aa5.71□□□□□ -1.49
USP28-213ENST00000544967 BTNL10A8MVZ5 291 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 N4BP3O15049 544 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 POLR3DP05423 398 aaPredicted RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 PTPRAP18433 802 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 ALDH3A1P30838 453 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 KIF5BP33176 963 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 JAG1P78504 1218 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 GUCY1A3Q02108 690 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 GHRHRQ02643 423 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 GALNTL6Q49A17 601 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 ERMARDQ5T6L9 678 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 RGMBQ6NW40 437 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 WDR59Q6PJI9 974 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 ERO1BQ86YB8 467 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 LMNTD2Q8IXW0 634 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 MB21D1Q8N884 522 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 SVIPQ8NHG7 77 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 PARD3BQ8TEW8 1205 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 ATRIPQ8WXE1 791 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 EZH1Q92800 747 aaPredicted RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 TLCD1Q96CP7 247 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 RRP36Q96EU6 259 aaKnown RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 CHMP6Q96FZ7 201 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 CCDC43Q96MW1 224 aaKnown RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 ZNF570Q96NI8 536 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 GORASP1Q9BQQ3 440 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 KRT23Q9C075 422 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 KIAA1683Q9H0B3 1180 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 RETREG1Q9H6L5 497 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 SERTAD1Q9UHV2 236 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 JAG2Q9Y219 1238 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 MROH7Q68CQ1 1323 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 A0A0U1RQJ8 604 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 LRRD1A4D1F6 860 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 GOLGA8BA8MQT2 603 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 RBAK-RBAKDNI3L0D1 243 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 NQO1P15559 274 aaKnown RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 ACADSP16219 412 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 ATP4AP20648 1035 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 NLRP5P59047 1200 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 CUL3Q13618 768 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 GPAT2Q6NUI2 795 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 NEDD1Q8NHV4 660 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 TGFBRAP1Q8WUH2 860 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 SEC14L1Q92503 715 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 PCMTD1Q96MG8 357 aaPredicted RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 CENPHQ9H3R5 247 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 NCOA5Q9HCD5 579 aaKnown RBP5.71□□□□□ -1.5
USP28-213ENST00000544967 NYAP2Q9P242 653 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 TMEM59LQ9UK28 342 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 TMCO1Q9UM00 188 aa5.71□□□□□ -1.5
USP28-213ENST00000544967 KLF18A0A0U1RQI7 1052 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 CLRN2A0PK11 232 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 PRKAB2O43741 272 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 ATP5HO75947 161 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 TNNC1P63316 161 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 PPARAQ07869 468 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 C2orf54Q08AI8 447 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 MYO1EQ12965 1108 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 PAK1Q13153 545 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 LAMB3Q13751 1172 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 SAFBQ15424 915 aaKnown RBP eCLIP5.7□□□□□ -1.5
USP28-213ENST00000544967 ZNF658Q5TYW1 1059 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 TMEM179Q6ZVK1 233 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 NCSTNQ92542 709 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 STAMBPL1Q96FJ0 436 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 ERGIC2Q96RQ1 377 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 CSRNP1Q96S65 589 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 TMEM109Q9BVC6 243 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.7□□□□□ -1.5
USP28-213ENST00000544967 SSU72P8A0A1W2PR75 194 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 POTEFA5A3E0 1075 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 SPDYE3A6NKU9 549 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms