RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 BYSLQ13895 437 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 KARSQ15046 597 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 QRICH1Q2TAL8 776 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 SYTL3Q4VX76 610 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 USP17L6PQ6QN14 398 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 CXCL17Q6UXB2 119 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 RD3Q7Z3Z2 195 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 CDC26Q8NHZ8 85 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 SEC62Q99442 399 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 P2RX7Q99572 595 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 SIK2Q9H0K1 926 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 POLR2DO15514 142 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 TRAK2O60296 914 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 NTSR2O95665 410 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 CTSEP14091 401 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 CHMLP26374 656 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 VEGFBP49765 207 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 CACNB1Q02641 598 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 INAVAQ3KP66 663 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ZNF34Q8IZ26 560 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 RIN2Q8WYP3 895 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 FAM81BQ96LP2 452 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 TIGD1Q96MW7 591 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 SLC13A4Q9UKG4 626 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 PREX2Q70Z35 1606 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ITIH6Q6UXX5 1313 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 RPL10AP62906 217 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 KDELC2Q7Z4H8 507 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 OSBP2Q969R2 916 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 L3MBTL3Q96JM7 780 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 H0Y626 953 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 NDUFB10O96000 172 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 KRT83P78385 493 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 COG7P83436 770 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 THOC5Q13769 683 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ZNF235Q14590 738 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 SV2CQ496J9 727 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ZC3H14Q6PJT7 736 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 TMEM47Q9BQJ4 181 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 TRIM7Q9C029 511 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 BLZF1Q9H2G9 400 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 PRDM15P57071 1507 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 FLT1P17948 1338 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 TBC1D3BA6NDS4 549 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 SERPIND1P05546 499 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ZNF286BP0CG31 522 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 NT5C2P49902 561 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 FAM26FQ5R3K3 315 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 GBP6Q6ZN66 633 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ADGRF4Q8IZF3 695 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ATOH1Q92858 354 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 SCYL1Q96KG9 808 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 POP1Q99575 1024 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 PRPSAP2O60256 369 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 DNAJC6O75061 913 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 CFIP05156 583 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 RAB27AP51159 221 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 ELOAQ14241 798 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 PDIA6Q15084 440 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 SPRYD7Q5W111 196 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 PHLDB2Q86SQ0 1253 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 SENP7Q9BQF6 1050 aa9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 METTL14Q9HCE5 456 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-202ENST00000381753 B3GAT3O94766 335 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 CXCL14O95715 111 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 STAT1P42224 750 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PSEN2P49810 448 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 RPS6KA2Q15349 733 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 FBXO46Q6PJ61 603 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 CEP128Q6ZU80 1094 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 GPR142Q7Z601 462 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 DNAAF3Q8N9W5 541 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PIGOQ8TEQ8 1089 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ANTXR1Q9H6X2 564 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 STAP1Q9ULZ2 295 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ELP1O95163 1332 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 CLIC2O15247 247 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 SGSM2O43147 1006 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 COPB1P53618 953 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 HIRAP54198 1017 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 BCAR1P56945 870 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 KCNH2Q12809 1159 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PAK1Q13153 545 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 NME3Q13232 169 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ADAM9Q13443 819 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 TEAD4Q15561 434 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 TBCCQ15814 346 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 CDO1Q16878 200 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 CACUL1Q86Y37 369 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 VPS52Q8N1B4 723 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 USP44Q9H0E7 712 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 LUC7L2Q9Y383 392 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 DEUP1Q05D60 604 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PLCL1Q15111 1095 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ELF2Q15723 593 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PRAMEF19Q5SWL8 479 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PADI6Q6TGC4 694 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 TOGARAM2Q6ZUX3 1019 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms