RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CDR2Q01850 454 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 RPUSD2Q8IZ73 545 aaKnown RBP20.72■□□□□ 0.91
USP48-201ENST00000308271 HOOK2Q96ED9 719 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 H7C0C1 242 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 HAUS5O94927 633 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 ATP5OP48047 213 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 TRIM51Q9BSJ1 452 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 MIS12Q9H081 205 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 MAD1L1Q9Y6D9 718 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 CNTNAP5Q8WYK1 1306 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 ZWINTO95229 277 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 GEN1Q17RS7 908 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 CASKIN2Q8WXE0 1202 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 EHD2Q9NZN4 543 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 CRYMQ14894 314 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 FOXR1Q6PIV2 292 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 TRMT10CQ7L0Y3 403 aaKnown RBP20.71■□□□□ 0.91
USP48-201ENST00000308271 DDX42Q86XP3 938 aaKnown RBP eCLIP20.71■□□□□ 0.91
USP48-201ENST00000308271 MAP7D3Q8IWC1 876 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 SH3RF3Q8TEJ3 882 aaPredicted RBP20.71■□□□□ 0.91
USP48-201ENST00000308271 ABCB11O95342 1321 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 FAM237AA0A1B0GTK4 181 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 PDXKO00764 312 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 ZBTB5O15062 677 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 ZBED4O75132 1171 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 PPFIA2O75334 1257 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 PLEKP08567 350 aaPredicted RBP20.71■□□□□ 0.91
USP48-201ENST00000308271 UCHL3P15374 230 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 DYNC1I2Q13409 638 aaKnown RBP20.71■□□□□ 0.91
USP48-201ENST00000308271 TRIM59Q8IWR1 403 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 NOD2Q9HC29 1040 aa20.71■□□□□ 0.91
USP48-201ENST00000308271 MYMKA6NI61 221 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 DBN1Q16643 649 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 ABCB5Q2M3G0 1257 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 BBS9Q3SYG4 887 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 BSPRYQ5W0U4 402 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 ATG16L1Q676U5 607 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 ZNF564Q8TBZ8 553 aaPredicted RBP20.7■□□□□ 0.9
USP48-201ENST00000308271 FAM20AQ96MK3 541 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 INTUQ9ULD6 942 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 CEP170BQ9Y4F5 1589 aaPredicted RBP20.7■□□□□ 0.9
USP48-201ENST00000308271 SFI1A8K8P3 1242 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 FGFR4P22455 802 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 PDE6BP35913 854 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 SNF8Q96H20 258 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 KIF20BQ96Q89 1820 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 UBE2Q2LH0YL09 131 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 GALCP54803 685 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 FOXP2O15409 715 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 P4HA1P13674 534 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 TTI2Q6NXR4 508 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 MCF2L2Q86YR7 1114 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 MINPP1Q9UNW1 487 aa20.7■□□□□ 0.9
USP48-201ENST00000308271 BRDTQ58F21 947 aaPredicted RBP20.69■□□□□ 0.9
USP48-201ENST00000308271 NLRP7Q8WX94 980 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 TMBIM4Q9HC24 238 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 SCINQ9Y6U3 715 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 STXBP3O00186 592 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 MCF2LO15068 1137 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 SCNN1DP51172 638 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 EDRF1Q3B7T1 1238 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 RINT1Q6NUQ1 792 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 DNAJC24Q6P3W2 148 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 AGGF1Q8N302 714 aaeCLIP20.69■□□□□ 0.9
USP48-201ENST00000308271 MAML1Q92585 1016 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 HNRNPCL1O60812 293 aaKnown RBP20.69■□□□□ 0.9
USP48-201ENST00000308271 CTTNQ14247 550 aaKnown RBP20.69■□□□□ 0.9
USP48-201ENST00000308271 STAT4Q14765 748 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 RFX6Q8HWS3 928 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 ERP44Q9BS26 406 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 INTS2Q9H0H0 1204 aaKnown RBP20.69■□□□□ 0.9
USP48-201ENST00000308271 DHX36Q9H2U1 1008 aaKnown RBP20.69■□□□□ 0.9
USP48-201ENST00000308271 SENP1Q9P0U3 644 aa20.69■□□□□ 0.9
USP48-201ENST00000308271 TESPA1A2RU30 521 aaPredicted RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 PHF2O75151 1096 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 TJP3O95049 919 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 BASP1P80723 227 aaKnown RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 EZH2Q15910 746 aaKnown RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 SLC44A5Q8NCS7 719 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 IFT122Q9HBG6 1241 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 SUCLA2Q9P2R7 463 aaPredicted RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 SEL1LQ9UBV2 794 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 SPAG7O75391 227 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 PDE1BQ01064 536 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 ROPN1BQ9BZX4 212 aaPredicted RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 ROPN1Q9HAT0 212 aaPredicted RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 SCYL2Q6P3W7 929 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 CLEC4GQ6UXB4 293 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 ARHGAP18Q8N392 663 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 SUDS3Q9H7L9 328 aaPredicted RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 GARSP41250 739 aaKnown RBP20.68■□□□□ 0.9
USP48-201ENST00000308271 TROAPQ12815 778 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 PDXDC2PQ6P474 469 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 NUP85Q9BW27 656 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 SSX2IPQ9Y2D8 614 aa20.68■□□□□ 0.9
USP48-201ENST00000308271 PITPNM2Q9BZ72 1349 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 SPECC1L-ADORA2AF8WAN1 911 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 CDH16O75309 829 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 ARL4CP56559 192 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 PPP2R5DQ14738 602 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms