RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GUCA1AP43080 201 aaPredicted RBP14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CUL3Q13618 768 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 THEMIS2Q5TEJ8 643 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 PDCD10Q9BUL8 212 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 STON1Q9Y6Q2 735 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CYTH3O43739 400 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 KRT78Q8N1N4 520 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 FAM161BQ96MY7 647 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 STK32BQ9NY57 414 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 PRG4Q92954 1404 aaPredicted RBP14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 SH3TC1Q8TE82 1336 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 APOA4P06727 396 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 ICE2Q659A1 982 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 TERB1Q8NA31 727 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 AIPL1Q9NZN9 384 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 ZC3H7BQ9UGR2 993 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 KIAA1024Q9UPX6 916 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 BNIP3LO60238 219 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 PSMC6P62333 389 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 FKBP3Q00688 224 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 PPP4R3CPQ6ZMV5 832 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 HAUS5O94927 633 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 EAPPQ56P03 285 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 CMTM5Q96DZ9 223 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 PCDHB15Q9Y5E8 787 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 FAM170AA1A519 330 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 GRK2P25098 689 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 ADAM30Q9UKF2 790 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 SNX14Q9Y5W7 946 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 DTNBO60941 627 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 BEND6Q5SZJ8 279 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 EIF4G3O43432 1585 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 UBAP1LF5GYI3 381 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 PLBD2Q8NHP8 589 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 ZNF577Q9BSK1 485 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 TOM1O60784 492 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 POTEAQ6S8J7 498 aa14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 PDCD6IPQ8WUM4 868 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-201ENST00000263630 SLC39A6Q13433 755 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 CERKLQ49MI3 558 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 SLC44A4Q53GD3 710 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 WDR11Q9BZH6 1224 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 OSBPP22059 807 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 SLC10A5Q5PT55 438 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 UBE2TQ9NPD8 197 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 FANCLQ9NW38 375 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 MAD2L2Q9UI95 211 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 POLA2Q14181 598 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 FAM45BPQ6NSW5 357 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ASIC4Q96FT7 647 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 SARS2Q9NP81 518 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 SAYSD1Q9NPB0 183 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ZFYVE9O95405 1425 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ZNF532Q9HCE3 1301 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 PI4K2BG5E9Z4 385 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 S100A9P06702 114 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ITPRIPL1Q6GPH6 555 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 PRUNE1Q86TP1 453 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 KRT76Q01546 638 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 POU5F1BQ06416 359 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 MKRN3Q13064 507 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ZBTB33Q86T24 672 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 TEX2Q8IWB9 1127 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 MRPL1Q9BYD6 325 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ITGAXP20702 1163 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 PPARAQ07869 468 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ADCK5Q3MIX3 580 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 C8orf34Q49A92 452 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 SARM1Q6SZW1 724 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 TMC2Q8TDI7 906 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 DCPSQ96C86 337 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 L3MBTL3Q96JM7 780 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 CLEC4MQ9H2X3 399 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 BATF3Q9NR55 127 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 KCTD2Q14681 263 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 C8orf37Q96NL8 207 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 DDX50Q9BQ39 737 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 CCDC87Q9NVE4 849 aa14.8□□□□□ -0.04
CCDC88A-201ENST00000263630 ACEP12821 1306 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 SAC3D1A6NKF1 404 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 OR6B2Q6IFH4 312 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 CYGBQ8WWM9 190 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 IARS2Q9NSE4 1012 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 BBS2Q9BXC9 721 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 EPS8L2Q9H6S3 715 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 KCNA2P16389 499 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 PRAMEP78395 509 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 PARP9Q8IXQ6 854 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 ASNSD1Q9NWL6 643 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 UTP6Q9NYH9 597 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 MORC2Q9Y6X9 1032 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 LRRC53A6NM62 1247 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 GCFC2P16383 781 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 RAD23BP54727 409 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 PSMD2Q13200 908 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 PHKG1Q16816 387 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 ERAP1Q9NZ08 941 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 PCDHA1Q9Y5I3 950 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 ENC1O14682 589 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms