RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 SFMBT1Q9UHJ3 866 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 MTUS1Q9ULD2 1270 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 AFPP02771 609 aaKnown RBP11.27□□□□□ -0.61
LIG1-220ENST00000601091 GGCXP38435 758 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 PTPROQ16827 1216 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 TTI2Q6NXR4 508 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 TMEM139Q8IV31 216 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 SPATA4Q8NEY3 305 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 NKX2-3Q8TAU0 364 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 HOXA2O43364 376 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 VDRP11473 427 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 ALDH1B1P30837 517 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 CTNNA1P35221 906 aaKnown RBP11.27□□□□□ -0.61
LIG1-220ENST00000601091 GFPT1Q06210 699 aaPredicted RBP11.27□□□□□ -0.61
LIG1-220ENST00000601091 PPP4R3CPQ6ZMV5 832 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 SIX5Q8N196 739 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 LINC00116Q8NCU8 138 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 GJA10Q969M2 543 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 ERGIC2Q96RQ1 377 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 KANSL2Q9H9L4 492 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 PSD3Q9NYI0 1048 aa11.27□□□□□ -0.61
LIG1-220ENST00000601091 AFDNP55196 1824 aaKnown RBP11.27□□□□□ -0.61
LIG1-220ENST00000601091 PALM3A6NDB9 673 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 ZNF185O15231 689 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 IGBP1P78318 339 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 COASYQ13057 564 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 C10orf76Q5T2E6 689 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 NFRKBQ6P4R8 1299 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 TMC4Q7Z404 712 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 CENPTQ96BT3 561 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ZCWPW1Q9H0M4 648 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 STMN4Q9H169 189 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 FAM205AQ6ZU69 1335 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 PABPN1LA6NDY0 278 aaKnown RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 MYMKA6NI61 221 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ZBTB5O15062 677 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 HSPA1AP0DMV8 641 aaKnown RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 HSPA1BP0DMV9 641 aaKnown RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 BCRP11274 1271 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 PPP4CP60510 307 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 CTTNBP2NLQ9P2B4 639 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 FBXL5Q9UKA1 691 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 SSX2IPQ9Y2D8 614 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 RABGAP1Q9Y3P9 1069 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 LRRIQ3A6PVS8 624 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 C21orf2O43822 256 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 GAS7O60861 476 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 RTN3O95197 1032 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 ABCB4P21439 1286 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ARHGAP25P42331 645 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 MCCD1P59942 119 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 ARHGAP44Q17R89 818 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 RC3H1Q5TC82 1133 aaKnown RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 SAMD14Q8IZD0 417 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 UBL4BQ8N7F7 174 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ANKS4BQ8N8V4 417 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 RDH13Q8NBN7 331 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 COMMD8Q9NX08 183 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ZC3H4Q9UPT8 1303 aaKnown RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 A0A1W2PQJ5 194 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 SMIM23A6NLE4 172 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ALOX15P16050 662 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 CNGA1P29973 690 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 HALP42357 657 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 PPP2R5EQ16537 467 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 KRT71Q3SY84 523 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 SEL1L2Q5TEA6 688 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 WDR93Q6P2C0 686 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 CCNI2Q6ZMN8 369 aaPredicted RBP11.26□□□□□ -0.61
LIG1-220ENST00000601091 TRAPPC11Q7Z392 1133 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 FAM178BQ8IXR5 827 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 SELENOSQ9BQE4 189 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 RAB17Q9H0T7 212 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 CCDC68Q9H2F9 335 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 ANKZF1Q9H8Y5 726 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 PLAGL2Q9UPG8 496 aa11.26□□□□□ -0.61
LIG1-220ENST00000601091 E9PMD0 336 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 MEIS1O00470 390 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 PALMO75781 387 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 TGFB3P10600 412 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 KLK7P49862 253 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 CYP2J2P51589 502 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 CALCOCO2Q13137 446 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 PTK7Q13308 1070 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 CLUL1Q15846 466 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIG1-220ENST00000601091 PPP1R18Q6NYC8 613 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 ALKBH5Q6P6C2 394 aaKnown RBP11.25□□□□□ -0.61
LIG1-220ENST00000601091 ANO3Q9BYT9 981 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 ZBTB21Q9ULJ3 1066 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 E7EVH7 732 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 ITIH3Q06033 890 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 FUT2Q10981 343 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 C16orf86Q6ZW13 317 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 MAEAQ7L5Y9 396 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 SNX32Q86XE0 403 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 LMNTD2Q8IXW0 634 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 PBKQ96KB5 322 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 COA1Q9GZY4 146 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 GINM1Q9NU53 330 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms