RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TMEM62Q0P6H9 643 aa16.73■□□□□ 0.27
TRIM28-207ENST00000597136 BFSP2Q13515 415 aa16.73■□□□□ 0.27
TRIM28-207ENST00000597136 MBTPS1Q14703 1052 aa16.73■□□□□ 0.27
TRIM28-207ENST00000597136 POTEGQ6S5H5 508 aa16.73■□□□□ 0.27
TRIM28-207ENST00000597136 LBHD1Q9BQE6 289 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-207ENST00000597136 POLR3CQ9BUI4 534 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-207ENST00000597136 CCSER1Q9C0I3 900 aa16.73■□□□□ 0.27
TRIM28-207ENST00000597136 FAM13BQ9NYF5 915 aa16.73■□□□□ 0.27
TRIM28-207ENST00000597136 PITPNM1O00562 1244 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CTSHP09668 335 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 ACRP10323 421 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 RPA1P27694 616 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CCT6AP40227 531 aaKnown RBP16.72■□□□□ 0.27
TRIM28-207ENST00000597136 RBL2Q08999 1139 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 EFCAB12Q6NXP0 572 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CHRDL2Q6WN34 429 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CCDC73Q6ZRK6 1079 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CABP7Q86V35 215 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 KIAA0319LQ8IZA0 1049 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 LRRC71Q8N4P6 559 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 RETREG2Q8NC44 543 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CAGE1Q8TC20 777 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 TUFT1Q9NNX1 390 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 KCNH3Q9ULD8 1083 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 LYPLA2O95372 231 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 MBD3O95983 291 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CHRNA1P02708 482 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 SELPP16109 830 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 TXLNAP40222 546 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 FPGSQ05932 587 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 FAM160A1Q05DH4 1040 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 MKRN4PQ13434 485 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-207ENST00000597136 DRP2Q13474 957 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 SNW1Q13573 536 aaKnown RBP16.72■□□□□ 0.27
TRIM28-207ENST00000597136 XKR9Q5GH70 373 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 PRPF38BQ5VTL8 546 aaKnown RBP16.72■□□□□ 0.27
TRIM28-207ENST00000597136 KRT79Q5XKE5 535 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 LRRC8DQ7L1W4 858 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 DEFB128Q7Z7B8 93 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 METTL13Q8N6R0 699 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 ENGASEQ8NFI3 743 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 NEK9Q8TD19 979 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 SNX29Q8TEQ0 813 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 PLIN2Q99541 437 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 PANK2Q9BZ23 570 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 SUGCTQ9HAC7 445 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CDHR5Q9HBB8 845 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 CYP26B1Q9NR63 512 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 BMP2KQ9NSY1 1161 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-207ENST00000597136 COLQQ9Y215 455 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-207ENST00000597136 STK24Q9Y6E0 443 aa16.72■□□□□ 0.27
TRIM28-207ENST00000597136 A0A087X0B3 334 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 SMIM35A0A1B0GVV1 85 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 DKC1O60832 514 aaKnown RBP eCLIP16.71■□□□□ 0.27
TRIM28-207ENST00000597136 NR1I2O75469 434 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 CLCN3P51790 818 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 KARSQ15046 597 aaKnown RBP16.71■□□□□ 0.27
TRIM28-207ENST00000597136 FMR1NBQ8N0W7 255 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-207ENST00000597136 TMEM199Q8N511 208 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 LINC01465Q8N7H1 131 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 ERMNQ8TAM6 284 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 CEP170P1Q96L14 293 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 PNMA5Q96PV4 448 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 PPP1R16BQ96T49 567 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 PRO3102Q9H379 93 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 KIAA1024Q9UPX6 916 aa16.71■□□□□ 0.27
TRIM28-207ENST00000597136 RSPH10B2B2RC85 870 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 NBNO60934 754 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 RSPH10BP0C881 870 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 SYKP43405 635 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 TBC1D8BQ0IIM8 1120 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 ZRSR1Q15695 479 aaKnown RBP16.7■□□□□ 0.26
TRIM28-207ENST00000597136 TCTN1Q2MV58 587 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 C9orf50Q5SZB4 431 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 TAF2Q6P1X5 1199 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 OTUD6AQ7L8S5 288 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 KCNK18Q7Z418 384 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 RPAINQ86UA6 219 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 CCDC155Q8N6L0 562 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 PDILTQ8N807 584 aa16.7■□□□□ 0.26
TRIM28-207ENST00000597136 ZNF668Q96K58 619 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-207ENST00000597136 DDX19AQ9NUU7 478 aaKnown RBP16.7■□□□□ 0.26
TRIM28-207ENST00000597136 TTC3P53804 2025 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 MAGEB2O15479 319 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 POLR2DO15514 142 aaKnown RBP16.69■□□□□ 0.26
TRIM28-207ENST00000597136 SLC26A4O43511 780 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 MAFO75444 373 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-207ENST00000597136 ZNF202O95125 648 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 VTNP04004 478 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 MGAT3Q09327 533 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 GRB10Q13322 594 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 SKOR2Q2VWA4 1001 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-207ENST00000597136 FAM26DQ5JW98 314 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 HYIQ5T013 277 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 HAUS3Q68CZ6 603 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 NACC1Q96RE7 527 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.69■□□□□ 0.265e-14■□□□□ 10.4
TRIM28-207ENST00000597136 UBE2OQ9C0C9 1292 aaKnown RBP16.69■□□□□ 0.26
TRIM28-207ENST00000597136 IL23AQ9NPF7 189 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 ANKEF1Q9NU02 776 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms