RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 OLFML3Q9NRN5 406 aa33.84■■■■□ 3.01
CTCF-203ENST00000566078 EVPLQ92817 2033 aa33.84■■■■□ 3.01
CTCF-203ENST00000566078 HOXD8P13378 290 aaPredicted RBP33.83■■■■□ 3.01
CTCF-203ENST00000566078 TPM4P67936 248 aa33.83■■■■□ 3.01
CTCF-203ENST00000566078 ARHGEF6Q15052 776 aa33.83■■■■□ 3.01
CTCF-203ENST00000566078 DGKDQ16760 1214 aa33.83■■■■□ 3.01
CTCF-203ENST00000566078 FAM102BQ5T8I3 360 aa33.83■■■■□ 3.01
CTCF-203ENST00000566078 GUF1Q8N442 669 aaKnown RBP33.83■■■■□ 3.01
CTCF-203ENST00000566078 DHTKD1Q96HY7 919 aaPredicted RBP33.83■■■■□ 3.01
CTCF-203ENST00000566078 DRC1Q96MC2 740 aa33.83■■■■□ 3.01
CTCF-203ENST00000566078 MRPL44Q9H9J2 332 aaKnown RBP33.83■■■■□ 3.01
CTCF-203ENST00000566078 SEL1LQ9UBV2 794 aa33.83■■■■□ 3.01
CTCF-203ENST00000566078 ADCY3O60266 1144 aa33.82■■■■□ 3.01
CTCF-203ENST00000566078 POLGP54098 1239 aaPredicted RBP33.82■■■■□ 3.01
CTCF-203ENST00000566078 CACNB2Q08289 660 aaPredicted RBP33.82■■■■□ 3.01
CTCF-203ENST00000566078 MYOCDQ8IZQ8 938 aa33.82■■■■□ 3.01
CTCF-203ENST00000566078 MCPH1Q8NEM0 835 aa33.82■■■■□ 3.01
CTCF-203ENST00000566078 RAET1EQ8TD07 263 aa33.82■■■■□ 3.01
CTCF-203ENST00000566078 GPRC5CQ9NQ84 441 aa33.82■■■■□ 3.01
CTCF-203ENST00000566078 TRPC6Q9Y210 931 aa33.82■■■■□ 3.01
CTCF-203ENST00000566078 EMC2Q15006 297 aa33.82■■■■□ 3
CTCF-203ENST00000566078 TARBP2Q15633 366 aaKnown RBP33.82■■■■□ 3
CTCF-203ENST00000566078 ODR4Q5SWX8 454 aa33.82■■■■□ 3
CTCF-203ENST00000566078 AP5M1Q9H0R1 490 aa33.82■■■■□ 3
CTCF-203ENST00000566078 Q9Y3F1 56 aa33.82■■■■□ 3
CTCF-203ENST00000566078 NFE2L3Q9Y4A8 694 aa33.82■■■■□ 3
CTCF-203ENST00000566078 A6NJR5 290 aa33.81■■■■□ 3
CTCF-203ENST00000566078 CASP5P51878 434 aa33.81■■■■□ 3
CTCF-203ENST00000566078 CEP89Q96ST8 783 aa33.81■■■■□ 3
CTCF-203ENST00000566078 C16orf70Q9BSU1 422 aa33.81■■■■□ 3
CTCF-203ENST00000566078 XPNPEP1Q9NQW7 623 aa33.81■■■■□ 3
CTCF-203ENST00000566078 PDLIM7Q9NR12 457 aa33.81■■■■□ 3
CTCF-203ENST00000566078 ZNF215Q9UL58 517 aaPredicted RBP33.81■■■■□ 3
CTCF-203ENST00000566078 TRIM49BA6NDI0 452 aa33.8■■■■□ 3
CTCF-203ENST00000566078 CNGA1P29973 690 aa33.8■■■■□ 3
CTCF-203ENST00000566078 P2RX5Q93086 422 aa33.8■■■■□ 3
CTCF-203ENST00000566078 PPME1Q9Y570 386 aa33.8■■■■□ 3
CTCF-203ENST00000566078 MYBP10242 640 aa33.79■■■■□ 3
CTCF-203ENST00000566078 CCNE1P24864 410 aa33.79■■■■□ 3
CTCF-203ENST00000566078 RFC5P40937 340 aa33.79■■■■□ 3
CTCF-203ENST00000566078 PLCB2Q00722 1185 aa33.79■■■■□ 3
CTCF-203ENST00000566078 SPATA1Q5VX52 437 aa33.79■■■■□ 3
CTCF-203ENST00000566078 FAM178BQ8IXR5 827 aa33.79■■■■□ 3
CTCF-203ENST00000566078 DHX33Q9H6R0 707 aaKnown RBP33.79■■■■□ 3
CTCF-203ENST00000566078 LARSQ9P2J5 1176 aaKnown RBP33.79■■■■□ 3
CTCF-203ENST00000566078 FRMPD3Q5JV73 1810 aa33.79■■■■□ 3
CTCF-203ENST00000566078 HBP1O60381 514 aa33.79■■■■□ 3
CTCF-203ENST00000566078 GCNT3O95395 438 aa33.79■■■■□ 3
CTCF-203ENST00000566078 HMGCRP04035 888 aa33.79■■■■□ 3
CTCF-203ENST00000566078 PLS3P13797 630 aa33.79■■■■□ 3
CTCF-203ENST00000566078 PRKAR2AP13861 404 aaKnown RBP33.79■■■■□ 3
CTCF-203ENST00000566078 NMT1P30419 496 aaKnown RBP33.79■■■■□ 3
CTCF-203ENST00000566078 CPT1AP50416 773 aa33.79■■■■□ 3
CTCF-203ENST00000566078 SOX10P56693 466 aa33.79■■■■□ 3
CTCF-203ENST00000566078 SCFD1Q8WVM8 642 aa33.79■■■■□ 3
CTCF-203ENST00000566078 SLC7A3Q8WY07 619 aa33.79■■■■□ 3
CTCF-203ENST00000566078 KIFAP3Q92845 792 aa33.79■■■■□ 3
CTCF-203ENST00000566078 HSD3B7Q9H2F3 369 aa33.79■■■■□ 3
CTCF-203ENST00000566078 FANCLQ9NW38 375 aa33.79■■■■□ 3
CTCF-203ENST00000566078 DUSP11O75319 330 aaKnown RBP33.78■■■■□ 3
CTCF-203ENST00000566078 KIF20AO95235 890 aa33.78■■■■□ 3
CTCF-203ENST00000566078 PMS1P54277 932 aaKnown RBP33.78■■■■□ 3
CTCF-203ENST00000566078 TPD52L1Q16890 204 aaPredicted RBP33.78■■■■□ 3
CTCF-203ENST00000566078 EPM2AIP1Q7L775 607 aaPredicted RBP33.78■■■■□ 3
CTCF-203ENST00000566078 FIZ1Q96SL8 496 aa33.78■■■■□ 3
CTCF-203ENST00000566078 RNPEPQ9H4A4 650 aa33.78■■■■□ 3
CTCF-203ENST00000566078 SIP14410 1827 aa33.77■■■■□ 3
CTCF-203ENST00000566078 BICDL2A1A5D9 508 aa33.77■■■■□ 3
CTCF-203ENST00000566078 ZBTB42B2RXF5 422 aa33.77■■■■□ 3
CTCF-203ENST00000566078 H3BRB1 525 aa33.77■■■■□ 3
CTCF-203ENST00000566078 SEPT4O43236 478 aa33.77■■■■□ 3
CTCF-203ENST00000566078 BRDTQ58F21 947 aaPredicted RBP33.77■■■■□ 3
CTCF-203ENST00000566078 TUT1Q9H6E5 874 aaKnown RBP33.77■■■■□ 3
CTCF-203ENST00000566078 IRX5P78411 483 aaPredicted RBP33.76■■■■□ 3
CTCF-203ENST00000566078 NELFCDQ8IXH7 590 aa33.76■■■■□ 3
CTCF-203ENST00000566078 PXYLP1Q8TE99 480 aa33.76■■■■□ 3
CTCF-203ENST00000566078 POLR3FQ9H1D9 316 aaPredicted RBP33.76■■■■□ 3
CTCF-203ENST00000566078 SEMA6BQ9H3T3 888 aa33.76■■■■□ 3
CTCF-203ENST00000566078 K7ENM7 598 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 AP5Z1O43299 807 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 CCND3P30281 292 aaPredicted RBP33.75■■■□□ 2.99
CTCF-203ENST00000566078 DEKP35659 375 aaKnown RBP33.75■■■□□ 2.99
CTCF-203ENST00000566078 PRMT2P55345 433 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 TBC1D8BQ0IIM8 1120 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 CENPPQ6IPU0 288 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 TTI2Q6NXR4 508 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 ANP32BQ92688 251 aaKnown RBP33.75■■■□□ 2.99
CTCF-203ENST00000566078 MAFO75444 373 aaPredicted RBP33.75■■■□□ 2.99
CTCF-203ENST00000566078 PEX3P56589 373 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 BEX3Q00994 111 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 ANKRD40Q6AI12 368 aa33.75■■■□□ 2.99
CTCF-203ENST00000566078 EIF3DO15371 548 aaKnown RBP eCLIP33.74■■■□□ 2.99
CTCF-203ENST00000566078 PRPF6O94906 941 aaKnown RBP33.74■■■□□ 2.99
CTCF-203ENST00000566078 FSCN1Q16658 493 aaKnown RBP33.74■■■□□ 2.99
CTCF-203ENST00000566078 HSP90AA4PQ58FG1 418 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 STXBP4Q6ZWJ1 553 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 ZNF720Q7Z2F6 126 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 TRAPPC12Q8WVT3 735 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 TMEM143Q96AN5 459 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 SAMSN1Q9NSI8 373 aaKnown RBP33.74■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms