RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MTHFRP42898 656 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 FAM189BP81408 668 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 SMC1AQ14683 1233 aaKnown RBP19.25■□□□□ 0.67
VPS29-204ENST00000548259 KIZQ2M2Z5 673 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 MIS18BP1Q6P0N0 1132 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 CMTR1Q8N1G2 835 aaKnown RBP19.25■□□□□ 0.67
VPS29-204ENST00000548259 CCDC82Q8N4S0 544 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 ADAM7Q9H2U9 754 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 CWH43Q9H720 699 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 ZNF302Q9NR11 478 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 CFAP54Q96N23 3096 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 PTPRZ1P23471 2315 aaPredicted RBP19.24■□□□□ 0.67
VPS29-204ENST00000548259 IGKV6D-21A0A0A0MT36 114 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 ARP10275 920 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 NAPAP54920 295 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 MCTP2Q6DN12 878 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 PPP1R18Q6NYC8 613 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 METTL13Q8N6R0 699 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 TMEM40Q8WWA1 233 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 MAP4K1Q92918 833 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 OSMRQ99650 979 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 CEP131Q9UPN4 1083 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 TAF6LQ9Y6J9 622 aa19.24■□□□□ 0.67
VPS29-204ENST00000548259 hCG_1642624A0A1W2PR95 340 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 CARNS1A5YM72 827 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 HIDE1A8MVS5 230 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 MEIS1O00470 390 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 SH2B2O14492 632 aaPredicted RBP19.23■□□□□ 0.67
VPS29-204ENST00000548259 SGSM2O43147 1006 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 TMOD1P28289 359 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 CA8P35219 290 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 ABHD15Q6UXT9 468 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 TMTC3Q6ZXV5 915 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 NIPA1Q7RTP0 329 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 FAM228AQ86W67 206 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 PLCD3Q8N3E9 789 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 TDRD5Q8NAT2 981 aaKnown RBP19.23■□□□□ 0.67
VPS29-204ENST00000548259 FANCBQ8NB91 859 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 CYP2W1Q8TAV3 490 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 MAP7D2Q96T17 732 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 CDHR5Q9HBB8 845 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 RIC8AQ9NPQ8 531 aa19.23■□□□□ 0.67
VPS29-204ENST00000548259 RBM8AQ9Y5S9 174 aaKnown RBP19.23■□□□□ 0.67
VPS29-204ENST00000548259 DDX39AO00148 427 aaKnown RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 MAGEB2O15479 319 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 PDGFBP01127 241 aaPredicted RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 GSPT1P15170 499 aaKnown RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 RXRAP19793 462 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 NBL1P41271 181 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 ADCY7P51828 1080 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 ITGB3BPQ13352 177 aaPredicted RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 AP3B2Q13367 1082 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 ASTLQ6HA08 431 aaPredicted RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 MRPL43Q8N983 215 aaKnown RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 BBXQ8WY36 941 aaPredicted RBP19.22■□□□□ 0.67
VPS29-204ENST00000548259 RSPH1Q8WYR4 309 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 ANO3Q9BYT9 981 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 DZANK1Q9NVP4 752 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 HCSTQ9UBK5 93 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 HCFC2Q9Y5Z7 792 aa19.22■□□□□ 0.67
VPS29-204ENST00000548259 hCG_1984214I3L0E3 225 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 ALDH7A1P49419 539 aaKnown RBP19.21■□□□□ 0.67
VPS29-204ENST00000548259 ATAT1Q5SQI0 421 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 SWSAP1Q6NVH7 229 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 CCDC60Q8IWA6 550 aaPredicted RBP19.21■□□□□ 0.67
VPS29-204ENST00000548259 ZNF713Q8N859 430 aaPredicted RBP19.21■□□□□ 0.67
VPS29-204ENST00000548259 RNF169Q8NCN4 708 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 NKD2Q969F2 451 aaPredicted RBP19.21■□□□□ 0.67
VPS29-204ENST00000548259 CASD1Q96PB1 797 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 PPP1R16BQ96T49 567 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 MRPL9Q9BYD2 267 aaKnown RBP19.21■□□□□ 0.67
VPS29-204ENST00000548259 POMKQ9H5K3 350 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 RBM28Q9NW13 759 aaKnown RBP19.21■□□□□ 0.67
VPS29-204ENST00000548259 KIAA1671Q9BY89 1806 aa19.21■□□□□ 0.67
VPS29-204ENST00000548259 KMT2EQ8IZD2 1858 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 PRR23AA6NEV1 266 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 C2CD4DB7Z1M9 353 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 C22orf31O95567 290 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 BRD1O95696 1058 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 VTNP04004 478 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 SREBF1P36956 1147 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 CLCN5P51795 746 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 GIT2Q14161 759 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 DSC3Q14574 896 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 ASCL5Q7RTU5 278 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 ERMP1Q7Z2K6 904 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 MICU3Q86XE3 530 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 PLA2G4DQ86XP0 818 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 ZDHHC14Q8IZN3 488 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 TMEM169Q96HH4 297 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 TBC1D22BQ9NU19 505 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 DBR1Q9UK59 544 aaKnown RBP19.2■□□□□ 0.66
VPS29-204ENST00000548259 AKT3Q9Y243 479 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 USTQ9Y2C2 406 aa19.2■□□□□ 0.66
VPS29-204ENST00000548259 C2orf71A6NGG8 1288 aa19.19■□□□□ 0.66
VPS29-204ENST00000548259 GPR32O75388 356 aa19.19■□□□□ 0.66
VPS29-204ENST00000548259 CCNE2O96020 404 aa19.19■□□□□ 0.66
VPS29-204ENST00000548259 WWC2Q6AWC2 1192 aa19.19■□□□□ 0.66
VPS29-204ENST00000548259 ECHDC2Q86YB7 292 aa19.19■□□□□ 0.66
VPS29-204ENST00000548259 SMAP1Q8IYB5 467 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 171.9 ms