RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CLTBP09497 229 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 TMOD1P28289 359 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 SYKP43405 635 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 CLCN3P51790 818 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 NDUFA8P51970 172 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 PTK7Q13308 1070 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 PADI6Q6TGC4 694 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 CLEC17AQ6ZS10 378 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 GPBP1Q86WP2 473 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 EXOC8Q8IYI6 725 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 KCTD17Q8N5Z5 321 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 CCDC155Q8N6L0 562 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 IQUBQ8NA54 791 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 TMEM87AQ8NBN3 555 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 LARP4BQ92615 738 aaKnown RBP16.65■□□□□ 0.26
NUP54-213ENST00000513352 TOX2Q96NM4 488 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 MTRQ99707 1265 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 PYM1Q9BRP8 204 aaKnown RBP16.65■□□□□ 0.26
NUP54-213ENST00000513352 GOLPH3LQ9H4A5 285 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 BLOC1S4Q9NUP1 217 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 TMEM39AQ9NV64 488 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 AKT3Q9Y243 479 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 PCDHA2Q9Y5H9 948 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 DGAT1O75907 488 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 CD4P01730 458 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 KRT18P05783 430 aaKnown RBP16.64■□□□□ 0.25
NUP54-213ENST00000513352 DNM2P50570 870 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 ADAM17P78536 824 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 FAAP100Q0VG06 881 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 TAF2Q6P1X5 1199 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 RSPH3Q86UC2 560 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 SERINC5Q86VE9 423 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 CEP57L1Q8IYX8 460 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 LRRC15Q8TF66 581 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 DNAJB3Q8WWF6 145 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 MAP7D2Q96T17 732 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 PPP1R16BQ96T49 567 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 PRKAG2Q9UGJ0 569 aa16.64■□□□□ 0.25
NUP54-213ENST00000513352 MAFO75444 373 aaPredicted RBP16.63■□□□□ 0.25
NUP54-213ENST00000513352 CTSHP09668 335 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 THPOP40225 353 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 SLC12A3P55017 1021 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 UBE2HP62256 183 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 RAD51AP2Q09MP3 1159 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 FAM102BQ5T8I3 360 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 SV2BQ7L1I2 683 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 SYT2Q8N9I0 419 aaPredicted RBP16.63■□□□□ 0.25
NUP54-213ENST00000513352 DHX38Q92620 1227 aaKnown RBP16.63■□□□□ 0.25
NUP54-213ENST00000513352 WNT8BQ93098 351 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 TMEM143Q96AN5 459 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 SCLT1Q96NL6 688 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 CTAGE1Q96RT6 745 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 CEP89Q96ST8 783 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 RUSC1Q9BVN2 902 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 PPP1R12CQ9BZL4 782 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 HIPK3Q9H422 1215 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 DHX33Q9H6R0 707 aaKnown RBP16.63■□□□□ 0.25
NUP54-213ENST00000513352 PDLIM7Q9NR12 457 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 SERTAD1Q9UHV2 236 aa16.63■□□□□ 0.25
NUP54-213ENST00000513352 MYH11P35749 1972 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 SMIM35A0A1B0GVV1 85 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 M0QZ92 97 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 GAS2O43903 313 aaKnown RBP16.62■□□□□ 0.25
NUP54-213ENST00000513352 VTNP04004 478 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 TMEM62Q0P6H9 643 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 BFSP2Q13515 415 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 NAALADL2Q58DX5 795 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 RINT1Q6NUQ1 792 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 MCPH1Q8NEM0 835 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 TCP11Q8WWU5 503 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 CUEDC2Q9H467 287 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 SUCLA2Q9P2R7 463 aaPredicted RBP16.62■□□□□ 0.25
NUP54-213ENST00000513352 HPSEQ9Y251 543 aa16.62■□□□□ 0.25
NUP54-213ENST00000513352 NPHP3-ACAD11A0A0J9YXS1 232 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 CYP11B2P19099 503 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 FAM160A1Q05DH4 1040 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 DRP2Q13474 957 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 E2F4Q16254 413 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 SH3RF1Q7Z6J0 888 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 KIAA0319LQ8IZA0 1049 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 CAGE1Q8TC20 777 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 PSPC1Q8WXF1 523 aaKnown RBP16.61■□□□□ 0.25
NUP54-213ENST00000513352 STAMQ92783 540 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 ZNF668Q96K58 619 aaPredicted RBP16.61■□□□□ 0.25
NUP54-213ENST00000513352 POLR3FQ9H1D9 316 aaPredicted RBP16.61■□□□□ 0.25
NUP54-213ENST00000513352 ZHX3Q9H4I2 956 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 POLD4Q9HCU8 107 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 GPRC5CQ9NQ84 441 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 XPNPEP1Q9NQW7 623 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 USP25Q9UHP3 1055 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 GINS2Q9Y248 185 aa16.61■□□□□ 0.25
NUP54-213ENST00000513352 MKI67P46013 3256 aaKnown RBP16.6■□□□□ 0.25
NUP54-213ENST00000513352 IGKV6-21A0A0C4DH24 114 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 HIP1RO75146 1068 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 ZNF202O95125 648 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 CKBP12277 381 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 RAG1P15918 1043 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 LIG1P18858 919 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 AFMP43652 599 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 MRPS6P82932 125 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms