RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 BOCQ9BWV1 1114 aa7□□□□□ -1.29
UPF3A-205ENST00000479712 SMURF1Q9HCE7 757 aa7□□□□□ -1.29
UPF3A-205ENST00000479712 OXSMQ9NWU1 459 aa7□□□□□ -1.29
UPF3A-205ENST00000479712 TRHDEQ9UKU6 1024 aa7□□□□□ -1.29
UPF3A-205ENST00000479712 HFM1A2PYH4 1435 aa7□□□□□ -1.29
UPF3A-205ENST00000479712 H7C1D1 291 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 COBLO75128 1261 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 PRKD3O94806 890 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 AMY2AP04746 511 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 AMY2BP19961 511 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 NEK2P51955 445 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 HK2P52789 917 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 MAP2K1Q02750 393 aaPredicted RBP6.99□□□□□ -1.29
UPF3A-205ENST00000479712 CHRNEQ04844 493 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 SYDE2Q5VT97 1194 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 CREB3L3Q68CJ9 461 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 GALNT18Q6P9A2 607 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 ARHGAP36Q6ZRI8 547 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 EP400NLQ6ZTU2 488 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 HDGFL2Q7Z4V5 671 aaPredicted RBP6.99□□□□□ -1.29
UPF3A-205ENST00000479712 SPRED2Q7Z698 418 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 PTRH1Q86Y79 214 aaKnown RBP6.99□□□□□ -1.29
UPF3A-205ENST00000479712 RIOX2Q8IUF8 465 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 EFHBQ8N7U6 833 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 PIP4K2CQ8TBX8 421 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 ASIC4Q96FT7 647 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 H2AFY2Q9P0M6 372 aaPredicted RBP6.99□□□□□ -1.29
UPF3A-205ENST00000479712 RNF181Q9P0P0 153 aa6.99□□□□□ -1.29
UPF3A-205ENST00000479712 SZT2Q5T011 3432 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 KCNK3O14649 394 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 NKRFO15226 690 aaKnown RBP eCLIP6.98□□□□□ -1.29
UPF3A-205ENST00000479712 PRNPP04156 253 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 TACR1P25103 407 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 IRF9Q00978 393 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 HHIPL2Q6UWX4 724 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 VSIG10LQ86VR7 867 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 COL23A1Q86Y22 540 aaPredicted RBP6.98□□□□□ -1.29
UPF3A-205ENST00000479712 WFDC3Q8IUB2 231 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 SPPL2CQ8IUH8 684 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 NUP43Q8NFH3 380 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 KRTAP9-9Q9BYP9 154 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 KRTAP9-4Q9BYQ2 154 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 PRDM7Q9NQW5 492 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 PDLIM7Q9NR12 457 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 FBLN5Q9UBX5 448 aa6.98□□□□□ -1.29
UPF3A-205ENST00000479712 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.97□□□□□ -1.29
UPF3A-205ENST00000479712 A0A1W2PQJ5 194 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 TCRBV5S4A2TA0A5A2 114 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 KRIT1O00522 736 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 NRDCO43847 1150 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 PRKCAP17252 672 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 MVKQ03426 396 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 MCL1Q07820 350 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 FAPQ12884 760 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 LTBP1Q14766 1721 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 ZNF174Q15697 407 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 SMIM5Q71RC9 77 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 OXR1Q8N573 874 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 PDZD8Q8NEN9 1154 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 FLCNQ8NFG4 579 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.97□□□□□ -1.29
UPF3A-205ENST00000479712 SLC5A5Q92911 643 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 CCDC120Q96HB5 630 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 SCYL1Q96KG9 808 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 ERBINQ96RT1 1412 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 PLCD4Q9BRC7 762 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 YIPF4Q9BSR8 244 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 SLC6A20Q9NP91 592 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 RRP7BPQ9NSQ0 103 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 ACSL6Q9UKU0 697 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 DSEQ9UL01 958 aa6.97□□□□□ -1.29
UPF3A-205ENST00000479712 ALS2Q96Q42 1657 aa6.96□□□□□ -1.29
UPF3A-205ENST00000479712 TRPM3Q9HCF6 1732 aaPredicted RBP6.96□□□□□ -1.29
UPF3A-205ENST00000479712 N4BP2Q86UW6 1770 aaPredicted RBP6.96□□□□□ -1.3
UPF3A-205ENST00000479712 FITM1A5D6W6 292 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 MAN2B1O00754 1011 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 GABRDO14764 452 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 HIP1RO75146 1068 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 NTRK1P04629 796 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 MSL3P1P0C860 447 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 ZBTB48P10074 688 aaPredicted RBP6.96□□□□□ -1.3
UPF3A-205ENST00000479712 VEGFAP15692 232 aaPredicted RBP6.96□□□□□ -1.3
UPF3A-205ENST00000479712 SESN3P58005 492 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 GRM1Q13255 1194 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 NFE2Q16621 373 aaPredicted RBP6.96□□□□□ -1.3
UPF3A-205ENST00000479712 FIGNQ5HY92 759 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 FSTL4Q6MZW2 842 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 ZBTB46Q86UZ6 589 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 CABP7Q86V35 215 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 PASD1Q8IV76 773 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 NOSTRINQ8IVI9 506 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 KIAA1958Q8N8K9 716 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 UHMK1Q8TAS1 419 aaKnown RBP6.96□□□□□ -1.3
UPF3A-205ENST00000479712 SH3RF2Q8TEC5 729 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 MENTQ9BUN1 341 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 PCIF1Q9H4Z3 704 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 CCDC39Q9UFE4 941 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 SRPK3Q9UPE1 567 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 NRXN1Q9ULB1 1477 aa6.96□□□□□ -1.3
UPF3A-205ENST00000479712 PIK3C2AO00443 1686 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms