RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SCYL3Q8IZE3 742 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS41-211ENST00000466017 SHKBP1Q8TBC3 707 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 NUP133Q8WUM0 1156 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 LPAR1Q92633 364 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 C12orf42Q96LP6 360 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 MAF1Q9H063 256 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 KIAA1683Q9H0B3 1180 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 GSX1Q9H4S2 264 aaPredicted RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 C12orf49Q9H741 205 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 AS3MTQ9HBK9 375 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 NAP1L2Q9ULW6 460 aaPredicted RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 MORC2Q9Y6X9 1032 aaPredicted RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 MYH8P13535 1937 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 A0A1W2PRG0 241 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 ESYT2A0FGR8 921 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 MPHOSPH10O00566 681 aaKnown RBP6.3□□□□□ -1.4
VPS41-211ENST00000466017 CYTH3O43739 400 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 F13A1P00488 732 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 RXRAP19793 462 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 U2AF2P26368 475 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS41-211ENST00000466017 ARNTP27540 789 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 NF2P35240 595 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 USP14P54578 494 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 FKBP1BP68106 108 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 ICA1Q05084 483 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 NFKBIBQ15653 356 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 SLC4A8Q2Y0W8 1093 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 MAP1SQ66K74 1059 aaPredicted RBP6.3□□□□□ -1.4
VPS41-211ENST00000466017 SLFN13Q68D06 897 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 KRT26Q7Z3Y9 468 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 UBE3DQ7Z6J8 389 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 FAM160B2Q86V87 743 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 FBXL6Q8N531 539 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 FBF1Q8TES7 1133 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 CHURC1Q8WUH1 139 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 TNPO1Q92973 898 aaKnown RBP6.3□□□□□ -1.4
VPS41-211ENST00000466017 DDX11Q96FC9 970 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 C8orf76Q96K31 380 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 GBP4Q96PP9 640 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 ALG1Q9BT22 464 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 MYL10Q9BUA6 226 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 SLC26A6Q9BXS9 759 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 FOXP1Q9H334 677 aaPredicted RBP6.3□□□□□ -1.4
VPS41-211ENST00000466017 SEMA6CQ9H3T2 930 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 VCPKMTQ9H867 229 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 DISC1Q9NRI5 854 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 RAD18Q9NS91 495 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 PNMA2Q9UL42 364 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 AP4E1Q9UPM8 1137 aa6.3□□□□□ -1.4
VPS41-211ENST00000466017 H3BQV1 296 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CXCL11O14625 94 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 GAS2O43903 313 aaKnown RBP6.29□□□□□ -1.4
VPS41-211ENST00000466017 PLEKHA8P1O95397 391 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 BAG4O95429 457 aaKnown RBP6.29□□□□□ -1.4
VPS41-211ENST00000466017 NDUFB10O96000 172 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CTSHP09668 335 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 SCG2P13521 617 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 RAB6AP20340 208 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CALML3P27482 149 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 MCM4P33991 863 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 SLC1A4P43007 532 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 USP11P51784 963 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 RESTQ13127 1097 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 AP3B2Q13367 1082 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 PKP1Q13835 747 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 TRIM29Q14134 588 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 SLC35G1Q2M3R5 365 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 ARTNQ5T4W7 220 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 LDLRAD1Q5T700 205 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 MEI1Q5TIA1 1274 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 MCTP2Q6DN12 878 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 SEZ6L2Q6UXD5 910 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 ARMC9Q7Z3E5 817 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 BRAPQ7Z569 592 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 LDHDQ86WU2 507 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 ANKRD13AQ8IZ07 590 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 SAMD3Q8N6K7 520 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 DAGLBQ8NCG7 672 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 GPBAR1Q8TDU6 330 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CCDC12Q8WUD4 166 aaPredicted RBP6.29□□□□□ -1.4
VPS41-211ENST00000466017 EZH1Q92800 747 aaPredicted RBP6.29□□□□□ -1.4
VPS41-211ENST00000466017 PHKBQ93100 1093 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 FANCD2OSQ96PS1 177 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 PHF20Q9BVI0 1012 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 GLT8D2Q9H1C3 349 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 ACSS3Q9H6R3 686 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 C1GALT1Q9NS00 363 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 BARHL2Q9NY43 387 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CACNA2D2Q9NY47 1150 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CRIM1Q9NZV1 1036 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 PARP2Q9UGN5 583 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 FEM1BQ9UK73 627 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 RNF112Q9ULX5 631 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 AFG3L2Q9Y4W6 797 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 CSADQ9Y600 493 aa6.29□□□□□ -1.4
VPS41-211ENST00000466017 FAM95CA0A1B0GW59 222 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 FAM170BA6NMN3 283 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 WDR64B1ANS9 1081 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 WDR46O15213 610 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms