RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 DNAJB3Q8WWF6 145 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 CCSER1Q9C0I3 900 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 LRRC27Q9C0I9 530 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 FAM49AQ9H0Q0 323 aaPredicted RBP11.92□□□□□ -0.5
UBR4-208ENST00000459947 C1orf112Q9NSG2 853 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 AKT3Q9Y243 479 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 ZNF200P98182 395 aaPredicted RBP11.92□□□□□ -0.5
UBR4-208ENST00000459947 CTTNQ14247 550 aaKnown RBP11.92□□□□□ -0.5
UBR4-208ENST00000459947 TMEM240Q5SV17 173 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 ZNF579Q8NAF0 562 aaKnown RBP11.92□□□□□ -0.5
UBR4-208ENST00000459947 BRD1O95696 1058 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 AMHP03971 560 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 SMAD3P84022 425 aaKnown RBP11.92□□□□□ -0.5
UBR4-208ENST00000459947 EMC2Q15006 297 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 SRGAP1Q7Z6B7 1085 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 SCLT1Q96NL6 688 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 UIMC1Q96RL1 719 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 STK17AQ9UEE5 414 aa11.92□□□□□ -0.5
UBR4-208ENST00000459947 ZBTB42B2RXF5 422 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 WNT7AO00755 349 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 KRT85P78386 507 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 CYP4A11Q02928 519 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 CSPP1Q1MSJ5 1256 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 RASIP1Q5U651 963 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 ARID2Q68CP9 1835 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 RUFY4Q6ZNE9 571 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 ANO5Q75V66 913 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 CABP7Q86V35 215 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 KIAA0319LQ8IZA0 1049 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 RASSF8Q8NHQ8 419 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 RGL1Q9NZL6 768 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 SLC4A7Q9Y6M7 1214 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.91□□□□□ -0.5
UBR4-208ENST00000459947 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.91□□□□□ -0.5
UBR4-208ENST00000459947 CARNS1A5YM72 827 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 VWA3AA6NCI4 1184 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 H0YCG3 227 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 CUTAO60888 179 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 SFPQP23246 707 aaKnown RBP eCLIP11.91□□□□□ -0.5
UBR4-208ENST00000459947 PLEKHG4Q58EX7 1191 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 FBXO47Q5MNV8 452 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 CATSPER3Q86XQ3 398 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 KIFAP3Q92845 792 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 GJA10Q969M2 543 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 C2orf40Q9H1Z8 148 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 SKIP12755 728 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 PHKA2P46019 1235 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 PAK2Q13177 524 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 TRAF7Q6Q0C0 670 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 APBB1IPQ7Z5R6 666 aaPredicted RBP11.91□□□□□ -0.5
UBR4-208ENST00000459947 C17orf75Q9HAS0 396 aa11.91□□□□□ -0.5
UBR4-208ENST00000459947 SUCLA2Q9P2R7 463 aaPredicted RBP11.91□□□□□ -0.5
UBR4-208ENST00000459947 SPTLC2O15270 562 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 SPATA31C1P0DKV0 1188 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 RARRES1P49788 294 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 NCBP1Q09161 790 aaKnown RBP11.9□□□□□ -0.5
UBR4-208ENST00000459947 PTPAQ15257 358 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 ZNF365Q70YC5 407 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 SLC17A8Q8NDX2 589 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 CCDC51Q96ER9 411 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 SCAND2PQ9GZW5 306 aaPredicted RBP11.9□□□□□ -0.5
UBR4-208ENST00000459947 CUEDC2Q9H467 287 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 MAGEF1Q9HAY2 307 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 TRIP12Q14669 1992 aaPredicted RBP11.9□□□□□ -0.5
UBR4-208ENST00000459947 HIC1Q14526 733 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 CCDC73Q6ZRK6 1079 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 SUGCTQ9HAC7 445 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 COLQQ9Y215 455 aaPredicted RBP11.9□□□□□ -0.5
UBR4-208ENST00000459947 MED24O75448 989 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 RPS6KA5O75582 802 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 STAG3L1P0CL83 205 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 CYP11B2P19099 503 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 NBR1Q14596 966 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 TRAPPC12Q8WVT3 735 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 CCDC34Q96HJ3 373 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 SCLYQ96I15 445 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 IFT74Q96LB3 600 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 DRC1Q96MC2 740 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 CEP89Q96ST8 783 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.9□□□□□ -0.51e-10■□□□□ 8.8
UBR4-208ENST00000459947 NFKBIZQ9BYH8 718 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 CHST12Q9NRB3 414 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 MSRAQ9UJ68 235 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 COL4A3BPQ9Y5P4 624 aa11.9□□□□□ -0.5
UBR4-208ENST00000459947 PDE4DIPQ5VU43 2346 aa11.9□□□□□ -0.51
UBR4-208ENST00000459947 UMODL1Q5DID0 1318 aa11.9□□□□□ -0.51
UBR4-208ENST00000459947 CTSHP09668 335 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 AXLP30530 894 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 IFNLR1Q8IU57 520 aaPredicted RBP11.89□□□□□ -0.51
UBR4-208ENST00000459947 ZBTB8OSQ8IWT0 167 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 IFIH1Q9BYX4 1025 aaKnown RBP11.89□□□□□ -0.51
UBR4-208ENST00000459947 FAM13BQ9NYF5 915 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 ITGB8P26012 769 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 TMEM119Q4V9L6 283 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 DEFB128Q7Z7B8 93 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 LINC00301Q8NCQ3 95 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 USP28Q96RU2 1077 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 KIAA1024Q9UPX6 916 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 ZBBXA8MT70 800 aa11.89□□□□□ -0.51
UBR4-208ENST00000459947 HOXA2O43364 376 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms