RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 IRGCQ6NXR0 463 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 CCNI2Q6ZMN8 369 aaPredicted RBP14.21□□□□□ -0.13
USP40-208ENST00000450966 KRT26Q7Z3Y9 468 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 DIS3Q9Y2L1 958 aaKnown RBP14.21□□□□□ -0.13
USP40-208ENST00000450966 AP4S1Q9Y587 144 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 NCOA3Q9Y6Q9 1424 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 PODXLO00592 558 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 GPC4O75487 556 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 MYBL2P10244 700 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 CXCR5P32302 372 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 RCN1Q15293 331 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 GADL1Q6ZQY3 521 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 ZNF554Q86TJ5 538 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 COA1Q9GZY4 146 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 PRKAG2Q9UGJ0 569 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 PCDHA5Q9Y5H7 936 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 MT-ND3P03897 115 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 GCLCP48506 637 aaPredicted RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 CYTH1Q15438 398 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 CERKLQ49MI3 558 aaPredicted RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 PIK3AP1Q6ZUJ8 805 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 G2E3Q7L622 706 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 ADCK1Q86TW2 530 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 CRLF3Q8IUI8 442 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 CCT7Q99832 543 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 EXOC1LA0A1B0GW35 172 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 KPNA4O00629 521 aaPredicted RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 DAPK3O43293 454 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 ARFIP2P53365 341 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 CHRNDQ07001 517 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 GRAPQ13588 217 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 KRT24Q2M2I5 525 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 E4F1Q66K89 784 aaPredicted RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 CWF19L1Q69YN2 538 aaKnown RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 MAPKAPK5Q8IW41 473 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 GRAPLQ8TC17 118 aaPredicted RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 HAUS7Q99871 368 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 FAM129AQ9BZQ8 928 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 TRPV6Q9H1D0 765 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 RPAP3Q9H6T3 665 aaPredicted RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 DNAJC17Q9NVM6 304 aaKnown RBP14.21□□□□□ -0.14
USP40-208ENST00000450966 PRELID1Q9Y255 219 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 RWDD3Q9Y3V2 267 aa14.21□□□□□ -0.14
USP40-208ENST00000450966 GNGT2O14610 69 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 XPOTO43592 962 aaKnown RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 RABGAP1LQ5R372 815 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 TRMT10CQ7L0Y3 403 aaKnown RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 MYCBPAPQ8TBZ2 947 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 NHEJ1Q9H9Q4 299 aaPredicted RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 V9GY48 417 aaPredicted RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 IPO5O00410 1097 aaKnown RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 KCTD2Q14681 263 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 NSMFQ6X4W1 530 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 C2orf69Q8N8R5 385 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 STKLD1Q8NE28 680 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 DTX3LQ8TDB6 740 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 BHMTQ93088 406 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 TLK1Q9UKI8 766 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 TMCO1Q9UM00 188 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 LRCH1Q9Y2L9 728 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 ADGRG1Q9Y653 693 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 ZNF532Q9HCE3 1301 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 CRB1P82279 1406 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 H0YC42 278 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 PPP6R2O75170 966 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 CPP00450 1065 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 AGTP01019 485 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 ADCY1Q08828 1119 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 HIC1Q14526 733 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 RASA3Q14644 834 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 ZYXQ15942 572 aaKnown RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 TTC38Q5R3I4 469 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 ANKRD13CQ8N6S4 541 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 A1CFQ9NQ94 594 aaKnown RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 CDHR2Q9BYE9 1310 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 GOLGA8CPA6NN73 597 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 GTPBP6O43824 516 aaPredicted RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 STX1BP61266 288 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 EPM2AIP1Q7L775 607 aaPredicted RBP14.2□□□□□ -0.14
USP40-208ENST00000450966 DDX42Q86XP3 938 aaKnown RBP eCLIP14.2□□□□□ -0.14
USP40-208ENST00000450966 ABHD8Q96I13 439 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 DCLRE1BQ9H816 532 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 ANAPC5Q9UJX4 755 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 PCDHA13Q9Y5I0 950 aa14.2□□□□□ -0.14
USP40-208ENST00000450966 TXKP42681 527 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 FHDC1Q9C0D6 1143 aaPredicted RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 ADD3Q9UEY8 706 aaKnown RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 GINS2Q9Y248 185 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 N4BP1O75113 896 aaKnown RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 KCNA2P16389 499 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 GARSP41250 739 aaKnown RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 YWHAEP62258 255 aaKnown RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 THEMIS2Q5TEJ8 643 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 WDR24Q96S15 920 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 TTI1O43156 1089 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 TCP10Q12799 353 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 LRRC8BQ6P9F7 803 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 ELMSAN1Q6PJG2 1045 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 RSAD2Q8WXG1 361 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 ZNF274Q96GC6 653 aaPredicted RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms