RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 GOLPH3Q9H4A6 298 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 BCS1LQ9Y276 419 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 SLC16A4O15374 487 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 GBP1P32455 592 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 PIK3CAP42336 1068 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 IFNAR2P48551 515 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 EPHA7Q15375 998 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 UAP1Q16222 522 aaPredicted RBP20.04■□□□□ 0.8
USP48-204ENST00000400301 ZC2HC1CQ53FD0 456 aaPredicted RBP20.04■□□□□ 0.8
USP48-204ENST00000400301 MMGT1Q8N4V1 131 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 TUFT1Q9NNX1 390 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 H3BQF6 201 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 ZRANB2O95218 330 aaKnown RBP eCLIP20.04■□□□□ 0.8
USP48-204ENST00000400301 P4HBP07237 508 aaKnown RBP20.04■□□□□ 0.8
USP48-204ENST00000400301 CEP128Q6ZU80 1094 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 MTRQ99707 1265 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 FEM1BQ9UK73 627 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 HIP1RO75146 1068 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 ATF7P17544 494 aaPredicted RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 BPIFB4P59827 614 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 NAB2Q15742 525 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 SGO2Q562F6 1265 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 RMDN3Q96TC7 470 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 NEK9Q8TD19 979 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 DDX4Q9NQI0 724 aaKnown RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 AMACRQ9UHK6 382 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 LRRIQ3A6PVS8 624 aaPredicted RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 THAP12O43422 761 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 KRT15P19012 456 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 SLCO1A2P46721 670 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 QARSP47897 775 aaKnown RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 VAMP7P51809 220 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 EFCAB13Q8IY85 973 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 GRK7Q8WTQ7 553 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 FAM163AQ96GL9 167 aaPredicted RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 ZBTB16Q05516 673 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 SETDB1Q15047 1291 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 KCNK18Q7Z418 384 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 RFFLQ8WZ73 363 aa20.03■□□□□ 0.8
USP48-204ENST00000400301 MAK16Q9BXY0 300 aaKnown RBP20.03■□□□□ 0.8
USP48-204ENST00000400301 EMSYQ7Z589 1322 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 RNF225M0QZC1 329 aaPredicted RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 SLC16A3O15427 465 aaKnown RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 FTLP02792 175 aaPredicted RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 ATF2P15336 505 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 GALCP54803 685 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 PNMA8AQ86V59 439 aaPredicted RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 CDAN1Q8IWY9 1227 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 SYT2Q8N9I0 419 aaPredicted RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 SYN2Q92777 582 aaPredicted RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 RUNDC3BQ96NL0 473 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 INTS9Q9NV88 658 aaKnown RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 PCDHB4Q9Y5E5 795 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 A0A087WUV0 522 aaPredicted RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 RSPH10B2B2RC85 870 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 RSPH10BP0C881 870 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 ATP2A2P16615 1042 aaKnown RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 SHMT1P34896 483 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 PBX1P40424 430 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 CARSP49589 748 aaKnown RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 RHBDL3P58872 404 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 MTERF2Q49AM1 385 aa20.02■□□□□ 0.8
USP48-204ENST00000400301 DMGDHQ9UI17 866 aaKnown RBP20.02■□□□□ 0.8
USP48-204ENST00000400301 SART1O43290 800 aaKnown RBP20.02■□□□□ 0.79
USP48-204ENST00000400301 EVI5O60447 810 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 ECEL1O95672 775 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 KLHDC7AQ5VTJ3 777 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 RNF207Q6ZRF8 634 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 RPUSD2Q8IZ73 545 aaKnown RBP20.02■□□□□ 0.79
USP48-204ENST00000400301 RTKN2Q8IZC4 609 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 C4orf32Q8N8J7 132 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 RAB21Q9UL25 225 aa20.02■□□□□ 0.79
USP48-204ENST00000400301 MSH4O15457 936 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 ENTPD3O75355 529 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 GPC5P78333 572 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 KSR1Q8IVT5 923 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 SH2D3CQ8N5H7 860 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 ZNF507Q8TCN5 953 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 SCFD1Q8WVM8 642 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 SLC26A4O43511 780 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 CTNND1O60716 968 aaKnown RBP20.01■□□□□ 0.79
USP48-204ENST00000400301 KAZNQ674X7 775 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 PPP1R14CQ8TAE6 165 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 VPS37BQ9H9H4 285 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 VGLL3A8MV65 326 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 ABL1P00519 1130 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 STX2P32856 288 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 FMO5P49326 533 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 ZNF384Q8TF68 577 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 SLC7A3Q8WY07 619 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 RAB20Q9NX57 234 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 MYO3BQ8WXR4 1341 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 MIF4GDA9UHW6 222 aaKnown RBP20.01■□□□□ 0.79
USP48-204ENST00000400301 DAPK3O43293 454 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 NF2P35240 595 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 MEA1Q16626 185 aa20.01■□□□□ 0.79
USP48-204ENST00000400301 PRPF38AQ8NAV1 312 aaKnown RBP20.01■□□□□ 0.79
USP48-204ENST00000400301 PROCA1Q8NCQ7 364 aaPredicted RBP20.01■□□□□ 0.79
USP48-204ENST00000400301 ZNF277Q9NRM2 450 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 9519.2 ms