RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 ZNF229Q9UJW7 825 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 DDX5P17844 614 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 TRIM71Q2Q1W2 868 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 TRIM69Q86WT6 500 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 DESI2Q9BSY9 194 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 KMT5AQ9NQR1 393 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 NDFIP2Q9NV92 336 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 PCDHA4Q9UN74 947 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 RALGDSQ12967 914 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 NAA35Q5VZE5 725 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 DEPDC7Q96QD5 511 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 TMEM245Q9H330 911 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 ZNF304Q9HCX3 659 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 POLR3EQ9NVU0 708 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 RGS12O14924 1447 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 IKBKBO14920 756 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 DEUP1Q05D60 604 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 GRAMD1BQ3KR37 738 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 SGO2Q562F6 1265 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 TMEM63CQ9P1W3 806 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 SLAIN2Q9P270 581 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 PCDHA7Q9UN72 937 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 KDM5AP29375 1690 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 GYG1P46976 350 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 KLHL29Q96CT2 875 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 DHX36Q9H2U1 1008 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.89□□□□□ -0.357e-7■■■■□ 22.5
PCF11-201ENST00000298281 SEL1LQ9UBV2 794 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 LCMT1Q9UIC8 334 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 MTMR6Q9Y217 621 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 ABCC4O15439 1325 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 SLC39A14Q15043 492 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 PHLPP2Q6ZVD8 1323 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 PER1O15534 1290 aaPredicted RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 ECEL1O95672 775 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 BASP1P80723 227 aaKnown RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 TRIM32Q13049 653 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 ASIC4Q96FT7 647 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 ZNF500O60304 480 aaPredicted RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 MYO1DO94832 1006 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 CAPN1P07384 714 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 CCT7Q99832 543 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 USP44Q9H0E7 712 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 TCOF1Q13428 1488 aaKnown RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 SNAP25P60880 206 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 CALR3Q96L12 384 aaKnown RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 A0A0D9SFI3 127 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 NUP62P37198 522 aaPredicted RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 TMED2Q15363 201 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 DNAJC24Q6P3W2 148 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 HSPH1Q92598 858 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 P2RX5Q93086 422 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 EGFL8Q99944 293 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 UBN2Q6ZU65 1347 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 DDHD2O94830 711 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 ASMTLO95671 621 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 NCALDP61601 193 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 CHRNDQ07001 517 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 PPP4R3CPQ6ZMV5 832 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 BCL2L12Q9HB09 334 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 H2AFY2Q9P0M6 372 aaPredicted RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 TBK1Q9UHD2 729 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 NDUFB9Q9Y6M9 179 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 CCND2P30279 289 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 EIF3BP55884 814 aaKnown RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 RASSF7Q02833 373 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 SLC44A4Q53GD3 710 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 ORAI2Q96SN7 254 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 ACTR5Q9H9F9 607 aaPredicted RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 PCDHGB4Q9UN71 923 aa12.88□□□□□ -0.35
PCF11-201ENST00000298281 NUP153P49790 1475 aaKnown RBP12.88□□□□□ -0.35
PCF11-201ENST00000298281 RASSF10A6NK89 507 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 TFAMQ00059 246 aaKnown RBP12.87□□□□□ -0.35
PCF11-201ENST00000298281 CYP4A11Q02928 519 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 SMYD3Q9H7B4 428 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 ADCY3O60266 1144 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 BBOX1O75936 387 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 IFNAR2P48551 515 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 BCAMP50895 628 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 CACNA1FO60840 1977 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 PDIA3P30101 505 aaKnown RBP12.87□□□□□ -0.35
PCF11-201ENST00000298281 NDUFA8P51970 172 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 ADCK2Q7Z695 626 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 GPKOWQ92917 476 aaPredicted RBP eCLIP12.87□□□□□ -0.35
PCF11-201ENST00000298281 ATP8A1Q9Y2Q0 1164 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 MEIS1O00470 390 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 PHKG2P15735 406 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 MARK3P27448 753 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 HSPA2P54652 639 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 TBC1D19Q8N5T2 526 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 HIPK4Q8NE63 616 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 LBHD1Q9BQE6 289 aaPredicted RBP12.87□□□□□ -0.35
PCF11-201ENST00000298281 CCDC78A2IDD5 438 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 APOA1P02647 267 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 ATP6V1C1P21283 382 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 CDO1Q16878 200 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 MAPKBP1O60336 1514 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 GOLGA8SH3BPF8 625 aa12.87□□□□□ -0.35
PCF11-201ENST00000298281 TMED8Q6PL24 325 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms