RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CASP5P51878 434 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 ARMC9Q7Z3E5 817 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 IRF2BP2Q7Z5L9 587 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 MAPKAPK5Q8IW41 473 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 MRRFQ96E11 262 aaKnown RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 AK8Q96MA6 479 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 DDX23Q9BUQ8 820 aaKnown RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 CNOT10Q9H9A5 744 aaKnown RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 C6orf50Q9HD87 102 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 HDAC9Q9UKV0 1011 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 MAP3K13O43283 966 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 SLC8A3P57103 927 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 TRIP13Q15645 432 aaPredicted RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 TMEM266Q2M3C6 531 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 TGFBRAP1Q8WUH2 860 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 L3MBTL3Q96JM7 780 aaPredicted RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 ETNK1Q9HBU6 452 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 SFI1A8K8P3 1242 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 STAT3P40763 770 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 GALCP54803 685 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 GRIK3Q13003 919 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 MIS18BP1Q6P0N0 1132 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 MAGEC3Q8TD91 643 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 NSUN4Q96CB9 384 aaKnown RBP15.56■□□□□ 0.08
SDC1-201ENST00000254351 RMDN2Q96LZ7 410 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 EPB41L4BQ9H329 900 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 PIDD1Q9HB75 910 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 NKX1-2Q9UD57 310 aaPredicted RBP15.56■□□□□ 0.08
SDC1-201ENST00000254351 AMFRQ9UKV5 643 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 IGSF9BQ9UPX0 1349 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 GHRP10912 638 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 CALRP27797 417 aaKnown RBP15.56■□□□□ 0.08
SDC1-201ENST00000254351 MSH2P43246 934 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 MARCKSL1P49006 195 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 DCAF12L1Q5VU92 463 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 FITM2Q8N6M3 262 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 SLC35G2Q8TBE7 412 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 TLCD1Q96CP7 247 aa15.56■□□□□ 0.08
SDC1-201ENST00000254351 SMIM24O75264 130 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 PAEPP09466 180 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 CYP19A1P11511 503 aaPredicted RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 ATP2A2P16615 1042 aaKnown RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 BRD2P25440 801 aaKnown RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 ARHGAP44Q17R89 818 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 EXOC3L4Q17RC7 722 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 ZNF449Q6P9G9 518 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 PIGWQ7Z7B1 504 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 LONP2Q86WA8 852 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 DZIP1Q86YF9 867 aaKnown RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 FAM84BQ96KN1 310 aaPredicted RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 PWWP2AQ96N64 755 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 PABPC3Q9H361 631 aaKnown RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 FAM114A2Q9NRY5 505 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 EMILIN3Q9NT22 766 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 CPSF2Q9P2I0 782 aaKnown RBP15.55■□□□□ 0.08
SDC1-201ENST00000254351 POTEB3A0JP26 581 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 POTECB2RU33 542 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 RASGRF2O14827 1237 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 LRRN2O75325 713 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 CASP4P49662 377 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 TUBP50607 506 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 KCNQ4P56696 695 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 POTEBQ6S5H4 581 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 KRT25Q7Z3Z0 450 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 NT5DC3Q86UY8 548 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 GPBP1Q86WP2 473 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 IQCDQ96DY2 449 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 TAS2R14Q9NYV8 317 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 UBR2Q8IWV8 1755 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 GLI3P10071 1580 aa15.55■□□□□ 0.08
SDC1-201ENST00000254351 CCDC169A6NNP5 214 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 ANKRD63C9JTQ0 380 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 SNX3O60493 162 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 FLOT1O75955 427 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 CTCFP49711 727 aaPredicted RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 ATP11AP98196 1134 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 JAMLQ86YT9 394 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 MAB21L3Q8N8X9 362 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 GJD4Q96KN9 370 aaPredicted RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 ERP44Q9BS26 406 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 PPP1R12CQ9BZL4 782 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 GPCPD1Q9NPB8 672 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 BMP2KQ9NSY1 1161 aaPredicted RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 SLC5A4Q9NY91 659 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 ADAM22Q9P0K1 906 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 MYH1P12882 1939 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 TMEM120BA0PK00 339 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 SPDYE5A6NIY4 337 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 SMNDC1O75940 238 aaKnown RBP eCLIP15.54■□□□□ 0.08
SDC1-201ENST00000254351 PRPHP41219 470 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 MMP13P45452 471 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 KCNA1Q09470 495 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 PALB2Q86YC2 1186 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 CPNE8Q86YQ8 564 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 TRIM59Q8IWR1 403 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 RDH13Q8NBN7 331 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 C1orf131Q8NDD1 294 aaKnown RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 GANQ9H2C0 597 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 TRPC5Q9UL62 973 aaPredicted RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 KCPQ6ZWJ8 1503 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms