RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 OR52Z1P0C646 297 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 SELPP16109 830 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 THPOP40225 353 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 TRAPPC10P48553 1259 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 JAK3P52333 1124 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 ATP2C1P98194 919 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 FAM26DQ5JW98 314 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 FOXD4L5Q5VV16 416 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 LRRC8DQ7L1W4 858 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 KCNK18Q7Z418 384 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 TMCO2Q7Z6W1 182 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 HSCBQ8IWL3 235 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 KIAA0319LQ8IZA0 1049 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 LRRC71Q8N4P6 559 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 FOXD4L4Q8WXT5 416 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 BBXQ8WY36 941 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 LRCH3Q96II8 777 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 ZNF668Q96K58 619 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 LXNQ9BS40 222 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 NIFKQ9BYG3 293 aaKnown RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 FAM49AQ9H0Q0 323 aaPredicted RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 AZI2Q9H6S1 392 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 AGO3Q9H9G7 860 aaKnown RBP10.37□□□□□ -0.75
VPS35-206ENST00000565228 IL23AQ9NPF7 189 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 TUBE1Q9UJT0 475 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 PCDHA12Q9UN75 941 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 PCDHA2Q9Y5H9 948 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 IGKV6-21A0A0C4DH24 114 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 H3BQV1 296 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 STX6O43752 255 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 ARHGEF15O94989 841 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 SFNP31947 248 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 DDIT3P35638 169 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 CLCN3P51790 818 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 FAM160B1Q5W0V3 765 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 RPAINQ86UA6 219 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 CATSPER3Q86XQ3 398 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 IGSF22Q8N9C0 903 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 RDM1Q8NG50 284 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 LINC01599Q8WXQ3 324 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 PPP1R16BQ96T49 567 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 XPNPEP1Q9NQW7 623 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 PRKAG2Q9UGJ0 569 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 COL4A6Q14031 1691 aa10.36□□□□□ -0.75
VPS35-206ENST00000565228 CHD9Q3L8U1 2897 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 GPR32O75388 356 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 VTNP04004 478 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 P4HBP07237 508 aaKnown RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 QARSP47897 775 aaKnown RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 SLC26A2P50443 739 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 FXR2P51116 673 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS35-206ENST00000565228 PSMC5P62195 406 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 GNL2Q13823 731 aaKnown RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 LPIN1Q14693 890 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 SF3A1Q15459 793 aaKnown RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 MTERF2Q49AM1 385 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 ZNF484Q5JVG2 852 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 POTEGQ6S5H5 508 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 USP49Q70CQ1 688 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 OTOP2Q7RTS6 562 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 SPRED2Q7Z698 418 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 RTN4RL1Q86UN2 441 aaPredicted RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 SLFN12Q8IYM2 578 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 TDHQ8IZJ6 230 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 CAGE1Q8TC20 777 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 PIGOQ8TEQ8 1089 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 PNMA5Q96PV4 448 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 USP28Q96RU2 1077 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 NAP1L4Q99733 375 aaKnown RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 LBHD1Q9BQE6 289 aaPredicted RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 TMX1Q9H3N1 280 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 POLD4Q9HCU8 107 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 BMP2KQ9NSY1 1161 aaPredicted RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 CHD7Q9P2D1 2997 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 SEPT9Q9UHD8 586 aaPredicted RBP10.35□□□□□ -0.75
VPS35-206ENST00000565228 NOD1Q9Y239 953 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 CDY2AQ9Y6F7 541 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 COL1A2P08123 1366 aa10.35□□□□□ -0.75
VPS35-206ENST00000565228 SMIM35A0A1B0GVV1 85 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.34□□□□□ -0.75
VPS35-206ENST00000565228 RRN3P2A6NIE6 340 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 DDX11L8A8MPP1 907 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 RSPH10B2B2RC85 870 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 LYPLA2O95372 231 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 RSPH10BP0C881 870 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 PBX2P40425 430 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 DEFB103AP81534 67 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 ORC2Q13416 577 aaPredicted RBP10.34□□□□□ -0.75
VPS35-206ENST00000565228 BFSP2Q13515 415 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 RILPL1Q5EBL4 403 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 XKR3Q5GH77 459 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS35-206ENST00000565228 KSR1Q8IVT5 923 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 TPH2Q8IWU9 490 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 C4orf19Q8IY42 314 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 CKAP2LQ8IYA6 745 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 TMEM199Q8N511 208 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 DBF4BQ8NFT6 615 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 HERVK_113Q902F9 699 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 CLIC6Q96NY7 704 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms