RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RBM5P52756 815 aaKnown RBP eCLIP14.75□□□□□ -0.05
SHMT2-222ENST00000555774 CACNB3P54284 484 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 DCAF17Q5H9S7 520 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-222ENST00000555774 CFAP58Q5T655 872 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 RBM26Q5T8P6 1007 aaKnown RBP14.75□□□□□ -0.05
SHMT2-222ENST00000555774 KRT12Q99456 494 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 DBNDD1Q9H9R9 158 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 COL11A2P13942 1736 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-222ENST00000555774 IGLV3-22A0A075B6J6 115 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 OPLAHO14841 1288 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 PSMC2P35998 433 aaKnown RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 CARSP49589 748 aaKnown RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 IRAK1P51617 712 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 MRPS25P82663 173 aaKnown RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 SHROOM1Q2M3G4 852 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 RINT1Q6NUQ1 792 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 STXBP4Q6ZWJ1 553 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 SLFN11Q7Z7L1 901 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 IQCKQ8N0W5 287 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 RBM46Q8TBY0 533 aaKnown RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 SCFD2Q8WU76 684 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 BORCS6Q96GS4 357 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 ZIM3Q96PE6 472 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 HSD17B14Q9BPX1 270 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 KCND2Q9NZV8 630 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 GCNT4Q9P109 453 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 NFU1Q9UMS0 254 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 FAM13AO94988 1023 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 GDF11O95390 407 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 H2AFZP0C0S5 128 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 STAT1P42224 750 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 PPP2R5CQ13362 524 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 CUL1Q13616 776 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 ENOX2Q16206 610 aaKnown RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 DNAJC21Q5F1R6 531 aaKnown RBP14.74□□□□□ -0.05
SHMT2-222ENST00000555774 FOXR1Q6PIV2 292 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 H2AFVQ71UI9 128 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 TPCN2Q8NHX9 752 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 CASKIN2Q8WXE0 1202 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 HINFPQ9BQA5 517 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 ISCUQ9H1K1 167 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 EHMT1Q9H9B1 1298 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 RSPH14Q9UHP6 348 aa14.74□□□□□ -0.05
SHMT2-222ENST00000555774 MYH10P35580 1976 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 RSPH10B2B2RC85 870 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 CCDC188H7C350 402 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 KCNK3O14649 394 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 EIF3HO15372 352 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHMT2-222ENST00000555774 RSPH10BP0C881 870 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 CYP4A11Q02928 519 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 TTMPQ5BVD1 217 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 EMC10Q5UCC4 262 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 TCERG1LQ5VWI1 586 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 CCDC43Q96MW1 224 aaKnown RBP14.73□□□□□ -0.05
SHMT2-222ENST00000555774 TRERF1Q96PN7 1200 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 SUCLA2Q9P2R7 463 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-222ENST00000555774 LCMT1Q9UIC8 334 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 PRR12Q9ULL5 1215 aa14.73□□□□□ -0.05
SHMT2-222ENST00000555774 PGRMC1O00264 195 aaKnown RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 EML1O00423 815 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 TGFB1I1O43294 461 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 ECE2O60344 883 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 HSPA9P38646 679 aaKnown RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 NOP2P46087 812 aaKnown RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 SNAP25P60880 206 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 C1orf186Q6ZWK4 172 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 OTOP1Q7RTM1 612 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 FAM186BQ8IYM0 893 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 FLAD1Q8NFF5 587 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 SLC5A5Q92911 643 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 TAF1DQ9H5J8 278 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 KCNQ5Q9NR82 932 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 PACSIN2Q9UNF0 486 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 FRMPD4Q14CM0 1322 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 ZMYM2Q9UBW7 1377 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 ZNF646O15015 1829 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 BHMG1C9JSJ3 638 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 RAD51CO43502 376 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 PSMD10O75832 226 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 GH2P01242 217 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 ZBTB48P10074 688 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-222ENST00000555774 LMNB1P20700 586 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 CASP4P49662 377 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 ZNF131P52739 623 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 LRIG3Q6UXM1 1119 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 RASGEF1CQ8N431 466 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 IFT81Q8WYA0 676 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.72□□□□□ -0.057e-8■■□□□ 13.7
SHMT2-222ENST00000555774 PARVGQ9HBI0 331 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 ODF2LQ9ULJ1 636 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 STXBP5LQ9Y2K9 1186 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 PCDHAC2Q9Y5I4 1007 aa14.72□□□□□ -0.05
SHMT2-222ENST00000555774 SHTN1A0MZ66 631 aa14.71□□□□□ -0.05
SHMT2-222ENST00000555774 CCDC172P0C7W6 258 aa14.71□□□□□ -0.05
SHMT2-222ENST00000555774 HOXA13P31271 388 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-222ENST00000555774 DNA2P51530 1060 aa14.71□□□□□ -0.05
SHMT2-222ENST00000555774 PRELPP51888 382 aa14.71□□□□□ -0.05
SHMT2-222ENST00000555774 STAT2P52630 851 aa14.71□□□□□ -0.05
SHMT2-222ENST00000555774 CORO7P57737 925 aa14.71□□□□□ -0.05
SHMT2-222ENST00000555774 PPP2R5AQ15172 486 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms