RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GKAP1Q5VSY0 366 aaPredicted RBP19.11■□□□□ 0.65
SYNE3-202ENST00000553340 PSMD1Q99460 953 aa19.11■□□□□ 0.65
SYNE3-202ENST00000553340 MXD3Q9BW11 206 aa19.11■□□□□ 0.65
SYNE3-202ENST00000553340 METTL14Q9HCE5 456 aaKnown RBP19.11■□□□□ 0.65
SYNE3-202ENST00000553340 AMFRQ9UKV5 643 aa19.11■□□□□ 0.65
SYNE3-202ENST00000553340 ATF5Q9Y2D1 282 aaPredicted RBP19.11■□□□□ 0.65
SYNE3-202ENST00000553340 POTEFA5A3E0 1075 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 RPS6KA4O75676 772 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 POTEIP0CG38 1075 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 EIF3BP55884 814 aaKnown RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 TTBK2Q6IQ55 1244 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 POTEGQ6S5H5 508 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 POTEEQ6S8J3 1075 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 DPP8Q6V1X1 898 aaPredicted RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 ZKSCAN4Q969J2 545 aaPredicted RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 CELF4Q9BZC1 486 aaKnown RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 DPH5Q9H2P9 285 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 CNOT10Q9H9A5 744 aaKnown RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 KCNMB3Q9NPA1 279 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 DDX3XO00571 662 aaKnown RBP eCLIP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 RPL13P26373 211 aaKnown RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 JAM2P57087 298 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 GIT2Q14161 759 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 ANKRD20A8PQ5CZ79 823 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 CPLX4Q7Z7G2 160 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 CLEC10AQ8IUN9 316 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 U2AF1L4Q8WU68 220 aaKnown RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 TATDN2Q93075 761 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 TACO1Q9BSH4 297 aaKnown RBP19.1■□□□□ 0.65
SYNE3-202ENST00000553340 RAB17Q9H0T7 212 aa19.1■□□□□ 0.65
SYNE3-202ENST00000553340 IGKV6D-41A0A0C4DH26 115 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 DCDC2CA8MYV0 355 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 AKAP3O75969 853 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 FERP16591 822 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 STAT3P40763 770 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 SPDYCQ5MJ68 293 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 GPATCH4Q5T3I0 446 aaKnown RBP19.09■□□□□ 0.65
SYNE3-202ENST00000553340 SFR1Q86XK3 245 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 SLFN12Q8IYM2 578 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 P3H4Q92791 437 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 FMO2Q99518 471 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 CXorf56Q9H5V9 222 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 GCNT4Q9P109 453 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 TTC7AQ9ULT0 858 aaPredicted RBP19.09■□□□□ 0.65
SYNE3-202ENST00000553340 TNRC6CQ9HCJ0 1690 aaKnown RBP19.09■□□□□ 0.65
SYNE3-202ENST00000553340 KDM4FA0A1W2PPD8 638 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 DNM1LO00429 736 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 FGGP02679 453 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 CCDC172P0C7W6 258 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 SLC16A2P36021 539 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 MFSD14BQ5SR56 506 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 EPM2AIP1Q7L775 607 aaPredicted RBP19.09■□□□□ 0.65
SYNE3-202ENST00000553340 GLT8D2Q9H1C3 349 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 SIX2Q9NPC8 291 aa19.09■□□□□ 0.65
SYNE3-202ENST00000553340 ARFGEF1Q9Y6D6 1849 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 USP17L10C9JJH3 530 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 PPFIA2O75334 1257 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 HOXD13P35453 343 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 GALCP54803 685 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 TYW1Q9NV66 732 aaKnown RBP19.08■□□□□ 0.65
SYNE3-202ENST00000553340 AJAP1Q9UKB5 411 aaPredicted RBP19.08■□□□□ 0.65
SYNE3-202ENST00000553340 ATP8A1Q9Y2Q0 1164 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 GAKO14976 1311 aa19.08■□□□□ 0.65
SYNE3-202ENST00000553340 SLC16A3O15427 465 aaKnown RBP19.08■□□□□ 0.64
SYNE3-202ENST00000553340 NR3C1P04150 777 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 POU5F1Q01860 360 aaKnown RBP19.08■□□□□ 0.64
SYNE3-202ENST00000553340 GABPAQ06546 454 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 RC3H1Q5TC82 1133 aaKnown RBP19.08■□□□□ 0.64
SYNE3-202ENST00000553340 CATSPER3Q86XQ3 398 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 CCDC50Q8IVM0 306 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 SLC35C1Q96A29 364 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 REEP2Q9BRK0 252 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 DNM3Q9UQ16 869 aa19.08■□□□□ 0.64
SYNE3-202ENST00000553340 DIS3Q9Y2L1 958 aaKnown RBP19.08■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L15C9J2P7 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L13C9JLJ4 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L11C9JVI0 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L18D6R9N7 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L22D6RA61 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L17D6RBQ6 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L19D6RCP7 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L20D6RJB6 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 BACH1O14867 736 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 GNPATO15228 680 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 GFPT2O94808 682 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 IL1R1P14778 569 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L24Q0WX57 530 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 PABPC4Q13310 644 aaKnown RBP eCLIP19.07■□□□□ 0.64
SYNE3-202ENST00000553340 PICALMQ13492 652 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 SNCBQ16143 134 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 PPP2R5EQ16537 467 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 LACTB2Q53H82 288 aaPredicted RBP19.07■□□□□ 0.64
SYNE3-202ENST00000553340 CYB5D1Q6P9G0 228 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 USP17L6PQ6QN14 398 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 HOOK3Q86VS8 718 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 FUKQ8N0W3 1084 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 SYT2Q8N9I0 419 aaPredicted RBP19.07■□□□□ 0.64
SYNE3-202ENST00000553340 ERMNQ8TAM6 284 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 TLCD1Q96CP7 247 aa19.07■□□□□ 0.64
SYNE3-202ENST00000553340 TRIM31Q9BZY9 425 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms