RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TMX1Q9H3N1 280 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 ENTPD7Q9NQZ7 604 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 KCNH7Q9NS40 1196 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 BAZ2BQ9UIF8 2168 aaKnown RBP19.32■□□□□ 0.68
VPS29-204ENST00000548259 NFASCO94856 1347 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 HBP1O60381 514 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 KLRC1P26715 233 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 PPM1AP35813 382 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 BMS1Q14692 1282 aaKnown RBP19.31■□□□□ 0.68
VPS29-204ENST00000548259 UBE2SQ16763 222 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 FAM160B1Q5W0V3 765 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 CES5AQ6NT32 575 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 ANKRD54Q6NXT1 300 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 TRAPPC12Q8WVT3 735 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 MRPS27Q92552 414 aaKnown RBP19.31■□□□□ 0.68
VPS29-204ENST00000548259 RIPOR3Q96MK2 946 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 NECTIN4Q96NY8 510 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 PCYT2Q99447 389 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 MXRA8Q9BRK3 442 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 ERVK-5Q9HDB9 667 aa19.31■□□□□ 0.68
VPS29-204ENST00000548259 TYW1Q9NV66 732 aaKnown RBP19.31■□□□□ 0.68
VPS29-204ENST00000548259 CACNA1HO95180 2353 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 BACH1O14867 736 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 ERVFC1P60507 584 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 PLCB3Q01970 1234 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 MTMR3Q13615 1198 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 PLPP4Q5VZY2 271 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 ABI1Q8IZP0 508 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 CASP10Q92851 521 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 TCF25Q9BQ70 676 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 MYL10Q9BUA6 226 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 IL25Q9H293 177 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 ELAC1Q9H777 363 aaKnown RBP19.3■□□□□ 0.68
VPS29-204ENST00000548259 LY9Q9HBG7 655 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 TSHZ2Q9NRE2 1034 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 TMEM161AQ9NX61 479 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 ST3GAL5Q9UNP4 418 aa19.3■□□□□ 0.68
VPS29-204ENST00000548259 H0Y858 1186 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 FSCN2O14926 492 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 GALR2O43603 387 aaPredicted RBP19.29■□□□□ 0.68
VPS29-204ENST00000548259 FOSP01100 380 aaPredicted RBP19.29■□□□□ 0.68
VPS29-204ENST00000548259 PTH1RQ03431 593 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 FAM102BQ5T8I3 360 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 HEATR3Q7Z4Q2 680 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 SRBD1Q8N5C6 995 aaKnown RBP19.29■□□□□ 0.68
VPS29-204ENST00000548259 VN1R2Q8NFZ6 395 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 TMEM87BQ96K49 555 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 S1PR5Q9H228 398 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 SORCS3Q9UPU3 1222 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 NOC2LQ9Y3T9 749 aaKnown RBP19.29■□□□□ 0.68
VPS29-204ENST00000548259 COL1A2P08123 1366 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 ATG2AQ2TAZ0 1938 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 USP34Q70CQ2 3546 aa19.29■□□□□ 0.68
VPS29-204ENST00000548259 C9IYK1 514 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 PLEKHA8P1O95397 391 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 MCM5P33992 734 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 CRYBB1P53674 252 aaPredicted RBP19.28■□□□□ 0.68
VPS29-204ENST00000548259 ANTXR2P58335 489 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 RBM10P98175 930 aaKnown RBP19.28■□□□□ 0.68
VPS29-204ENST00000548259 ITIH3Q06033 890 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 CEP55Q53EZ4 464 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 ZNF484Q5JVG2 852 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 LLGL2Q6P1M3 1020 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 TMC7Q7Z402 723 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 MB21D2Q8IYB1 491 aaPredicted RBP19.28■□□□□ 0.68
VPS29-204ENST00000548259 KREMEN2Q8NCW0 462 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 ZNF558Q96NG5 402 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 TMEM117Q9H0C3 514 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 DOCK5Q9H7D0 1870 aa19.28■□□□□ 0.68
VPS29-204ENST00000548259 PROB1E7EW31 1015 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 PRC1O43663 620 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 MGEA5O60502 916 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 IGHDP01880 384 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 ZNF76P36508 570 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 LRRC43Q8N309 656 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 TMEM87AQ8NBN3 555 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 TCEAL9Q9UHQ7 104 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 SLC12A7Q9Y666 1083 aa19.27■□□□□ 0.68
VPS29-204ENST00000548259 ATG7O95352 703 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 ZSCAN20P17040 1043 aaPredicted RBP19.26■□□□□ 0.67
VPS29-204ENST00000548259 SP100P23497 879 aaPredicted RBP19.26■□□□□ 0.67
VPS29-204ENST00000548259 PDE4AP27815 886 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 APOBRQ0VD83 1088 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 KCNC3Q14003 757 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 TTC22Q5TAA0 569 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 PDXDC2PQ6P474 469 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 SYCE2Q6PIF2 218 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 KCNT2Q6UVM3 1135 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 SYNE3Q6ZMZ3 975 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 CKAP2LQ8IYA6 745 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 KIAA0319LQ8IZA0 1049 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 ZNF710Q8N1W2 664 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 APOL5Q9BWW9 433 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 GLT8D2Q9H1C3 349 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 MFSD1Q9H3U5 465 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 AGO4Q9HCK5 861 aaKnown RBP19.26■□□□□ 0.67
VPS29-204ENST00000548259 SPG21Q9NZD8 308 aa19.26■□□□□ 0.67
VPS29-204ENST00000548259 FGFR1P11362 822 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 CHMLP26374 656 aa19.25■□□□□ 0.67
VPS29-204ENST00000548259 LIFRP42702 1097 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms