RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CCDC129Q6ZRS4 1044 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 KRT26Q7Z3Y9 468 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 ARL8AQ96BM9 186 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PPP1R14BQ96C90 147 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 EDC3Q96F86 508 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 GDAP1L1Q96MZ0 367 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 TRAPPC9Q96Q05 1148 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 MPHOSPH6Q99547 160 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 EPAS1Q99814 870 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 CRNKL1Q9BZJ0 848 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 USP40Q9NVE5 1235 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 AATFQ9NY61 560 aaKnown RBP eCLIP5.74□□□□□ -1.49
USP28-213ENST00000544967 LRP2BPQ9P2M1 347 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 SRPRBQ9Y5M8 271 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 STXBP3O00186 592 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 GPAA1O43292 621 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 EEF1GP26641 437 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 GUCY1A2P33402 732 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PPP1R2P41236 205 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 FXR1P51114 621 aaKnown RBP eCLIP5.74□□□□□ -1.49
USP28-213ENST00000544967 IFT88Q13099 833 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PPIL2Q13356 520 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 CUL1Q13616 776 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 TSNAXIP1Q2TAA8 658 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 RNF187Q5TA31 235 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 HAUS3Q68CZ6 603 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 CEP57Q86XR8 500 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 ZFPM1Q8IX07 1006 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 RNF10Q8N5U6 811 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 SPATA4Q8NEY3 305 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 MIPOL1Q8TD10 442 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 LRRC45Q96CN5 670 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 SEC16BQ96JE7 1060 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 TCEANC2Q96MN5 208 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 ZNF341Q9BYN7 854 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 GLIS2Q9BZE0 524 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 FOXP1Q9H334 677 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 KIF9Q9HAQ2 790 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PI4KBQ9UBF8 816 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 FBXO2Q9UK22 296 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 HPS5Q9UPZ3 1129 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 ASB3Q9Y575 518 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PCDHGC5Q9Y5F6 944 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 GOLGA6L10A6NI86 522 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 KIF28PB7ZC32 967 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 PLA2G6O60733 806 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 TACC1O75410 805 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 CAPN15O75808 1086 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 PENKP01210 267 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 IGHA2P01877 340 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 PAPOLAP51003 745 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 COPB1P53618 953 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 HERVK_113P62684 666 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 KCTD2Q14681 263 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 DCAF15Q66K64 600 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 SULF1Q8IWU6 871 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 MB21D2Q8IYB1 491 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 ANKS4BQ8N8V4 417 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 CAGE1Q8TC20 777 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 NSMCE1Q8WV22 266 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 RANBP17Q9H2T7 1088 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 TACC3Q9Y6A5 838 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 ZSWIM8A7E2V4 1837 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 A0A0G2JLL6 359 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 ZNF233A6NK53 670 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 CCT8L1PA6NM43 557 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 DNM1LO00429 736 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 TEX33O43247 280 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 USO1O60763 962 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 HIP1RO75146 1068 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 ATG7O95352 703 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 MYL1P05976 194 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 PDHBP11177 359 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 EIF3BP55884 814 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 PPATQ06203 517 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 ENOX2Q16206 610 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 TBC1D25Q3MII6 688 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 CCDC122Q5T0U0 273 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 PRRT2Q7Z6L0 340 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 HVCN1Q96D96 273 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 MS4A4AQ96JQ5 239 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 SAMSN1Q9NSI8 373 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 RMND1Q9NWS8 449 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 ZFATQ9P243 1243 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 TCEAL9Q9UHQ7 104 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 GNEQ9Y223 722 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 AFG3L2Q9Y4W6 797 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 GMEB1Q9Y692 573 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 PPP1R3GB7ZBB8 358 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 TIMM44O43615 452 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 MBD4O95243 580 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 LDHAP00338 332 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 GSTA2P09210 222 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 HSPD1P10809 573 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 PAFAH1B1P43034 410 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 DYNLL1P63167 89 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 PSMD2Q13200 908 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 BYSLQ13895 437 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 RRP1BQ14684 758 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms