RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CCSER1Q9C0I3 900 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 BMP2KQ9NSY1 1161 aaPredicted RBP16.71■□□□□ 0.27
NUP54-213ENST00000513352 GTF2IRD1Q9UHL9 959 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 DNM3Q9UQ16 869 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 COL1A2P08123 1366 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 SLC26A4O43511 780 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 LYPLA2O95372 231 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 PTGISQ16647 500 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 TMEM119Q4V9L6 283 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 RRAGBQ5VZM2 374 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 ADALQ6DHV7 355 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 ANO5Q75V66 913 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 SESTD1Q86VW0 696 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 FSIP1Q8NA03 581 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 SLC43A3Q8NBI5 491 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 HTATIP2Q9BUP3 242 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 SEZ6LQ9BYH1 1024 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 TRPV6Q9H1D0 765 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 CYP26B1Q9NR63 512 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 TRMT13Q9NUP7 481 aaKnown RBP16.7■□□□□ 0.26
NUP54-213ENST00000513352 TUBE1Q9UJT0 475 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 EVPLQ92817 2033 aa16.7■□□□□ 0.26
NUP54-213ENST00000513352 DCDC2CA8MYV0 355 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 E9PMD0 336 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 TREHO43280 583 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 B4GALT4O60513 344 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 STBD1O95210 358 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 STAT6P42226 847 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 POLGP54098 1239 aaPredicted RBP16.69■□□□□ 0.26
NUP54-213ENST00000513352 TLE2Q04725 743 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 TBC1D8BQ0IIM8 1120 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 DHX8Q14562 1220 aaKnown RBP16.69■□□□□ 0.26
NUP54-213ENST00000513352 HYIQ5T013 277 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 RESP18Q5W5W9 173 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 KCNK18Q7Z418 384 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 ZBTB10Q96DT7 871 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 NIFKQ9BYG3 293 aaKnown RBP16.69■□□□□ 0.26
NUP54-213ENST00000513352 ANKEF1Q9NU02 776 aa16.69■□□□□ 0.26
NUP54-213ENST00000513352 ALPK3Q96L96 1907 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 A0A1B0GVL5 298 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 USO1O60763 962 aaKnown RBP16.68■□□□□ 0.26
NUP54-213ENST00000513352 PFKFB1P16118 471 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 CMA1P23946 247 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 KLRC1P26715 233 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 CDK7P50613 346 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 HIC1Q14526 733 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 MTHFD1LQ6UB35 978 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 CCDC73Q6ZRK6 1079 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 FAM126BQ8IXS8 530 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 METTL13Q8N6R0 699 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 MRPS27Q92552 414 aaKnown RBP16.68■□□□□ 0.26
NUP54-213ENST00000513352 DHX58Q96C10 678 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 BHMT2Q9H2M3 363 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 DBR1Q9UK59 544 aaKnown RBP16.68■□□□□ 0.26
NUP54-213ENST00000513352 DNAH12Q6ZR08 3092 aa16.68■□□□□ 0.26
NUP54-213ENST00000513352 A0A087X0B3 334 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 A0A1W2PQ27 194 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 A0A1W2PQ64 194 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 A0A1W2PQD8 194 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 ZBTB42B2RXF5 422 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 GOLGA6L22H0YM25 854 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 EYA4O95677 639 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 CYP2C9P11712 490 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 XRCC6P12956 609 aaKnown RBP eCLIP16.67■□□□□ 0.26
NUP54-213ENST00000513352 RARRES1P49788 294 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 SNX17Q15036 470 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 TARBP2Q15633 366 aaKnown RBP16.67■□□□□ 0.26
NUP54-213ENST00000513352 C7orf61Q8IZ16 206 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 RETREG2Q8NC44 543 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 SLC7A3Q8WY07 619 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 FAM49AQ9H0Q0 323 aaPredicted RBP16.67■□□□□ 0.26
NUP54-213ENST00000513352 SUGCTQ9HAC7 445 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 PRDM5Q9NQX1 630 aaPredicted RBP16.67■□□□□ 0.26
NUP54-213ENST00000513352 STK17AQ9UEE5 414 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 KCNH3Q9ULD8 1083 aa16.67■□□□□ 0.26
NUP54-213ENST00000513352 MAGEB2O15479 319 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 POLR2DO15514 142 aaKnown RBP16.66■□□□□ 0.26
NUP54-213ENST00000513352 PRPF40AO75400 957 aaKnown RBP16.66■□□□□ 0.26
NUP54-213ENST00000513352 C22orf31O95567 290 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 PLA2G4BP0C869 781 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 HOXC8P31273 242 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 RFC5P40937 340 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 MCM6Q14566 821 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 EMC2Q15006 297 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 MARCH8Q5T0T0 291 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 C1orf53Q5VUE5 145 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 EFCAB12Q6NXP0 572 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 RUFY4Q6ZNE9 571 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 MAEAQ7L5Y9 396 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 ANKRD33Q7Z3H0 272 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 LRRC71Q8N4P6 559 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 RAD54LQ92698 747 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 DPF3Q92784 378 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 JPH2Q9BR39 696 aaPredicted RBP16.66■□□□□ 0.26
NUP54-213ENST00000513352 ATP6V0A4Q9HBG4 840 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 PPME1Q9Y570 386 aa16.66■□□□□ 0.26
NUP54-213ENST00000513352 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.65■□□□□ 0.26
NUP54-213ENST00000513352 MBLAC1A4D2B0 266 aaPredicted RBP16.65■□□□□ 0.26
NUP54-213ENST00000513352 EVI5O60447 810 aa16.65■□□□□ 0.26
NUP54-213ENST00000513352 GADD45BO75293 160 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms