RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 GOLGA8BA8MQT2 603 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 STX6O43752 255 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 ADAMTS4O75173 837 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 DEXIO95424 95 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 IGLV1-40P01703 118 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 CYP11A1P05108 521 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 SSRP1Q08945 709 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 STK3Q13188 491 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 ASPRV1Q53RT3 343 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 RPS26P11Q5JNZ5 115 aaPredicted RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 NOL9Q5SY16 702 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 GPATCH4Q5T3I0 446 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 ANGEL2Q5VTE6 544 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 LARP1BQ659C4 914 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 ATL3Q6DD88 541 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 BTNL9Q6UXG8 535 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 TMTC3Q6ZXV5 915 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 NOL8Q76FK4 1167 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 CDC37L1Q7L3B6 337 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 ZDHHC13Q8IUH4 622 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 FAM184AQ8NB25 1140 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 DCAF4Q8WV16 495 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 DCPSQ96C86 337 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 NECAB3Q96P71 396 aaPredicted RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 DUSP9Q99956 384 aaKnown RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 ZSCAN16Q9H4T2 348 aaPredicted RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 RIOX1Q9H6W3 641 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 ORC3Q9UBD5 711 aaPredicted RBP6.33□□□□□ -1.4
VPS41-211ENST00000466017 CLIP2Q9UDT6 1046 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 MAD2L2Q9UI95 211 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 MTMR6Q9Y217 621 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 TMX2Q9Y320 296 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 PCDHGC5Q9Y5F6 944 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 ADAMTSL1Q8N6G6 1762 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 WDR90Q96KV7 1748 aa6.33□□□□□ -1.4
VPS41-211ENST00000466017 PTPDC1A2A3K4 754 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 hCG_1984214I3L0E3 225 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 HYAL3O43820 417 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 NMT2O60551 498 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 JAK2O60674 1132 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 USP2O75604 605 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 GH2P01242 217 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 NFICP08651 508 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 CELA3AP09093 270 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 GSTP1P09211 210 aaKnown RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 PARP1P09874 1014 aaKnown RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 ZSCAN22P10073 491 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 PDHBP11177 359 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 EEF2P13639 858 aaKnown RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 VEGFAP15692 232 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 PTPN11Q06124 597 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 RRP1BQ14684 758 aaKnown RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 SEPT2Q15019 361 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 NBPF12Q5TAG4 269 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 GALNT17Q6IS24 598 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 DYMQ7RTS9 669 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 USP48Q86UV5 1035 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 MICU3Q86XE3 530 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 CLEC10AQ8IUN9 316 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 SRBD1Q8N5C6 995 aaKnown RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 ZNF713Q8N859 430 aaPredicted RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 FBXO18Q8NFZ0 1043 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 GATA6Q92908 595 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 MTMR8Q96EF0 704 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 MFSD14AQ96MC6 490 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 CORO1BQ9BR76 489 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 SPZ1Q9BXG8 430 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 SH2D4AQ9H788 454 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 NCOA5Q9HCD5 579 aaKnown RBP6.32□□□□□ -1.4
VPS41-211ENST00000466017 CYP4F12Q9HCS2 524 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 SH3GLB2Q9NR46 395 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 TMEM39AQ9NV64 488 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 GGA3Q9NZ52 723 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 ZBTB21Q9ULJ3 1066 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 STX8Q9UNK0 236 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 ATP6V1DQ9Y5K8 247 aa6.32□□□□□ -1.4
VPS41-211ENST00000466017 POLR2AP24928 1970 aaKnown RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 ASTN2O75129 1339 aaPredicted RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 C19orf81C9J6K1 198 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 KLRF2D3W0D1 207 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 F5H6K3 240 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 TMPRSS2O15393 492 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 F13BP05160 661 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 USP17L7P0C7H9 530 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 XBP1P17861 261 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 PTMSP20962 102 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 SSTR4P31391 388 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 JAG1P78504 1218 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 AKAP17AQ02040 695 aaKnown RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 KLRC3Q07444 240 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 ZNF543Q08ER8 600 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 ZNF252P-AS1Q0IIN9 211 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 TRAF1Q13077 416 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 PKN1Q16512 942 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 PFKFB3Q16875 520 aaPredicted RBP6.31□□□□□ -1.4
VPS41-211ENST00000466017 UVSSAQ2YD98 709 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 RNF43Q68DV7 783 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 ALG1LQ6GMV1 187 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 MIGA2Q7L4E1 593 aa6.31□□□□□ -1.4
VPS41-211ENST00000466017 SULF2Q8IWU5 870 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms