RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 KHDRBS2Q5VWX1 349 aaKnown RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 FANCBQ8NB91 859 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 OR6P1Q8NGX9 317 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 PNMA8BQ9ULN7 279 aaPredicted RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 TTI1O43156 1089 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 ADAM33Q9BZ11 813 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 UPF3AQ9H1J1 476 aaKnown RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 ANKRD36BQ8N2N9 1353 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 ZC3H4Q9UPT8 1303 aaKnown RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 F8W8V4 182 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 C2CD2LO14523 706 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 KCNQ3O43525 872 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 CCDC197Q8NCU1 140 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 KCNV2Q8TDN2 545 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 RAVER2Q9HCJ3 691 aaKnown RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 EHBP1L1Q8N3D4 1523 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 SETD1BQ9UPS6 1966 aaKnown RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 HMGB1P1B2RPK0 211 aaPredicted RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 K7ERI5 159 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 SUPT3HO75486 399 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 CASP14P31944 242 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 TAF1BQ53T94 588 aaPredicted RBP13.31□□□□□ -0.28
CHD3-203ENST00000380358 C10orf53Q8N6V4 93 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 AMNQ9BXJ7 453 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 RERGLQ9H628 205 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 GREM2Q9H772 168 aa13.31□□□□□ -0.28
CHD3-203ENST00000380358 FAM196BA6NMK8 535 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 GUCA1CO95843 209 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 SLFN14P0C7P3 912 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 TBCKQ8TEA7 893 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 LLPHQ9BRT6 129 aaKnown RBP13.3□□□□□ -0.28
CHD3-203ENST00000380358 FLT4P35916 1363 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 HNRNPCP07910 306 aaKnown RBP eCLIP13.3□□□□□ -0.28
CHD3-203ENST00000380358 CLCN1P35523 988 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 GRIK1P39086 918 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 CHAMP1Q96JM3 812 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 MCM8Q9UJA3 840 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 PRKCQQ04759 706 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 ATL3Q6DD88 541 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 GRAMD4Q6IC98 578 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 FAM47EQ6ZV65 393 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 ADCY3O60266 1144 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 TMPRSS15P98073 1019 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 PDCLQ13371 301 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 CYFIP1Q7L576 1253 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 TUBGCP2Q9BSJ2 902 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 SPTLC3Q9NUV7 552 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 CTSHP09668 335 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 KCNA2P16389 499 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 SLC9A1P19634 815 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 HS6ST3Q8IZP7 471 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 SLC35F6Q8N357 371 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 PPARGC1AQ9UBK2 798 aaKnown RBP13.3□□□□□ -0.28
CHD3-203ENST00000380358 TTLL1O95922 423 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 PSAPP07602 524 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 PDHA1P08559 390 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 KPNA2P52292 529 aaKnown RBP13.3□□□□□ -0.28
CHD3-203ENST00000380358 CCDC142Q17RM4 750 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 RPAINQ86UA6 219 aa13.3□□□□□ -0.28
CHD3-203ENST00000380358 DHX38Q92620 1227 aaKnown RBP13.3□□□□□ -0.28
CHD3-203ENST00000380358 C14orf93Q9H972 538 aaKnown RBP13.3□□□□□ -0.28
CHD3-203ENST00000380358 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.3□□□□□ -0.28
CHD3-203ENST00000380358 NFKBIAP25963 317 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 NUP93Q8N1F7 819 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 PALMDQ9NP74 551 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 COPRSQ9NQ92 184 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 WDR17Q8IZU2 1322 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 MEFVO15553 781 aaPredicted RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 ATP9BO43861 1147 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 FOSP01100 380 aaPredicted RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 USP17L8P0C7I0 530 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 PHKA1P46020 1223 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 PAPOLAP51003 745 aaKnown RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 SYDE2Q5VT97 1194 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 ARHGAP26Q9UNA1 814 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 TMEM62Q0P6H9 643 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 TUBB2AQ13885 445 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 KIZQ2M2Z5 673 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 ARHGAP45Q92619 1136 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 ZNF496Q96IT1 587 aaPredicted RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 TUBB2BQ9BVA1 445 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 MED4Q9NPJ6 270 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 TXLNGQ9NUQ3 528 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 USE1Q9NZ43 259 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 IMPACTQ9P2X3 320 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 MAP3K19Q56UN5 1328 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 USP17L3A6NCW0 530 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 USP17L4A6NCW7 530 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 MAN1A2O60476 641 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 BPIFB4P59827 614 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 SYTL3Q4VX76 610 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 USP17L1Q7RTZ2 530 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 SAYSD1Q9NPB0 183 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 DDX28Q9NUL7 540 aaKnown RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 ZNF212Q9UDV6 495 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 HSPA1AP0DMV8 641 aaKnown RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 HSPA1BP0DMV9 641 aaKnown RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 SKIP12755 728 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 TRIM60Q495X7 471 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 LRRC31Q6UY01 552 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms