RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MYL1P05976 194 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 IL2RBP14784 551 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 SOX6P35712 828 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 MAP3K5Q99683 1374 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 NPM3O75607 178 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 SERTAD1Q9UHV2 236 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 ITGA6P23229 1130 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 CCNA1P78396 465 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 TTC13Q8NBP0 860 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 DHTKD1Q96HY7 919 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 SH3GL1Q99961 368 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 THEM5Q8N1Q8 247 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PDE8AO60658 829 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PCP11498 1178 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 POTEEQ6S8J3 1075 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 BBS7Q8IWZ6 715 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PPP1R14AQ96A00 147 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PPP1R13BQ96KQ4 1090 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 APOL6Q9BWW8 343 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 SLFNL1Q499Z3 407 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 PKN3Q6P5Z2 889 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 MFN1Q8IWA4 741 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 PI4K2BQ8TCG2 481 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 NCOA5Q9HCD5 579 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 ADD3Q9UEY8 706 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 H7C0S8 307 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 ANXA1P04083 346 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 DLGAP5Q15398 846 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 NUDT18Q6ZVK8 323 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 RSPH1Q8WYR4 309 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 RMDN1Q96DB5 314 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 PAGR1Q9BTK6 254 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 SLFN12LQ6IEE8 588 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 EMBQ6PCB8 327 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 COG1Q8WTW3 980 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 CDHR1Q96JP9 859 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 FTOQ9C0B1 505 aaKnown RBP eCLIP14.86□□□□□ -0.033e-11■■■■■ 41.9
CCDC88A-201ENST00000263630 RASA4BC9J798 803 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 RASA4O43374 803 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 TCP10Q12799 353 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 C17orf53Q8N3J3 647 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 DIS3LQ8TF46 1054 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 ALCAMQ13740 583 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 CAPRIN2Q6IMN6 1127 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 GADL1Q6ZQY3 521 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 FBXO18Q8NFZ0 1043 aa14.86□□□□□ -0.03
CCDC88A-201ENST00000263630 SERPING1P05155 500 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 NR2F2P24468 414 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 INAQ16352 499 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 LRRC31Q6UY01 552 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 MRPL48Q96GC5 212 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 TRIM13O60858 407 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 CDC27P30260 824 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 NCKAP1LP55160 1127 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 LPIN2Q92539 896 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 BRD8Q9H0E9 1235 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 KLHL8Q9P2G9 620 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 FOSP01100 380 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 IRX1P78414 480 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 FAM26FQ5R3K3 315 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 FBXO11Q86XK2 927 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 EGFL8Q99944 293 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 GINM1Q9NU53 330 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 GRIN2BQ13224 1484 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 NCALDP61601 193 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 NDUFA5Q16718 116 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 TNNI3KQ59H18 835 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 CCDC103Q8IW40 242 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 TRIM62Q9BVG3 475 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 FHDC1Q9C0D6 1143 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 FPGT-TNNI3KV9GXZ4 949 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 CTIFO43310 598 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 SLCO1A2P46721 670 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 CSTF3Q12996 717 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 CNGB3Q9NQW8 809 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 ZNF500O60304 480 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 STX3Q13277 289 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 TBC1D1Q86TI0 1168 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 KMT5AQ9NQR1 393 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 SPDYE5A6NIY4 337 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 SPDYE7PQ495Y7 208 aa14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-201ENST00000263630 ARHGAP17Q68EM7 881 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 PLA2G4DQ86XP0 818 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 XAGE2Q96GT9 111 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 SCN3BQ9NY72 215 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ACSL3O95573 720 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 PFKFB1P16118 471 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 TTC30AQ86WT1 665 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 C7orf31Q8N865 590 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 GRAMD1AQ96CP6 724 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 DNAJC7Q99615 494 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 RPAP3Q9H6T3 665 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 FANCEQ9HB96 536 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 hCG_2014768A0A024R1R8 64 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 H0Y3Z8 333 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 HDLBPQ00341 1268 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 NOVA2Q9UNW9 492 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 KCNJ14Q9UNX9 436 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms