RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RTN4RL1Q86UN2 441 aaPredicted RBP20.16■□□□□ 0.82
HDDC3-205ENST00000559898 SP7Q8TDD2 431 aaPredicted RBP20.16■□□□□ 0.82
HDDC3-205ENST00000559898 ZNF577Q9BSK1 485 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 TM6SF1Q9BZW5 370 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 GJB4Q9NTQ9 266 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 PDRG1Q9NUG6 133 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 THEGQ9P2T0 379 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 BACH1O14867 736 aa20.15■□□□□ 0.82
HDDC3-205ENST00000559898 SCRN1Q12765 414 aa20.15■□□□□ 0.82
HDDC3-205ENST00000559898 TJAP1Q5JTD0 557 aa20.15■□□□□ 0.82
HDDC3-205ENST00000559898 MTHFD1LQ6UB35 978 aa20.15■□□□□ 0.82
HDDC3-205ENST00000559898 TGS1Q96RS0 853 aaKnown RBP20.15■□□□□ 0.82
HDDC3-205ENST00000559898 PPP1R16BQ96T49 567 aa20.15■□□□□ 0.82
HDDC3-205ENST00000559898 KIAA1671Q9BY89 1806 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 RRN3P2A6NIE6 340 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 M0R2N6 131 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 ENPP3O14638 875 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 MSH4O15457 936 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 EPB41L2O43491 1005 aaKnown RBP20.14■□□□□ 0.81
HDDC3-205ENST00000559898 CIITAP33076 1130 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 KCNQ1P51787 676 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 NLRP5P59047 1200 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 SSRP1Q08945 709 aaKnown RBP20.14■□□□□ 0.81
HDDC3-205ENST00000559898 SKIV2LQ15477 1246 aaKnown RBP20.14■□□□□ 0.81
HDDC3-205ENST00000559898 TEX2Q8IWB9 1127 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 CCDC12Q8WUD4 166 aaPredicted RBP20.14■□□□□ 0.81
HDDC3-205ENST00000559898 ZNF274Q96GC6 653 aaPredicted RBP20.14■□□□□ 0.81
HDDC3-205ENST00000559898 NECAB3Q96P71 396 aaPredicted RBP20.14■□□□□ 0.81
HDDC3-205ENST00000559898 ASB2Q96Q27 587 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 ZNF302Q9NR11 478 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 TPCN1Q9ULQ1 816 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 KCNJ14Q9UNX9 436 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 INSL6Q9Y581 213 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 PCDHA2Q9Y5H9 948 aa20.14■□□□□ 0.81
HDDC3-205ENST00000559898 LARGE1O95461 756 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 SEC24BO95487 1268 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 LINC00271P0C7V0 271 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 KLRC1P26715 233 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 GNA11P29992 359 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 TMEM266Q2M3C6 531 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 PDXDC2PQ6P474 469 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 ATP8B4Q8TF62 1192 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 TTC3P53804 2025 aa20.13■□□□□ 0.81
HDDC3-205ENST00000559898 GTPBP6O43824 516 aaPredicted RBP20.12■□□□□ 0.81
HDDC3-205ENST00000559898 CTDNEP1O95476 244 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 TDP2O95551 362 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 UGCGQ16739 394 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 TSHZ1Q6ZSZ6 1077 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 CCDC148Q8NFR7 591 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 TBCKQ8TEA7 893 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 TMEM40Q8WWA1 233 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 APBB2Q92870 758 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 YME1L1Q96TA2 773 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 TMX1Q9H3N1 280 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 TRPV2Q9Y5S1 764 aa20.12■□□□□ 0.81
HDDC3-205ENST00000559898 RALGAPA2Q2PPJ7 1873 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 ZNF862O60290 1169 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 MGEA5O60502 916 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 EPC2Q52LR7 807 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 MIS18BP1Q6P0N0 1132 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 RSPH3Q86UC2 560 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 KIAA0319LQ8IZA0 1049 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 ATXN2LQ8WWM7 1075 aaKnown RBP20.11■□□□□ 0.81
HDDC3-205ENST00000559898 CELF4Q9BZC1 486 aaKnown RBP20.11■□□□□ 0.81
HDDC3-205ENST00000559898 RC3H2Q9HBD1 1191 aaKnown RBP20.11■□□□□ 0.81
HDDC3-205ENST00000559898 SH3GLB2Q9NR46 395 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 GABBR1Q9UBS5 961 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 PCDHA4Q9UN74 947 aa20.11■□□□□ 0.81
HDDC3-205ENST00000559898 MAFBQ9Y5Q3 323 aaPredicted RBP20.11■□□□□ 0.81
HDDC3-205ENST00000559898 MUC3AQ02505 3323 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 SMIM35A0A1B0GVV1 85 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 CHMP2AO43633 222 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 HBP1O60381 514 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 DEXIO95424 95 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 C22orf31O95567 290 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 GATMP50440 423 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 AK2P54819 239 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 MRPS5P82675 430 aaKnown RBP20.1■□□□□ 0.81
HDDC3-205ENST00000559898 SETQ01105 290 aaPredicted RBP20.1■□□□□ 0.81
HDDC3-205ENST00000559898 FAM160B1Q5W0V3 765 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 ZNF746Q6NUN9 644 aaPredicted RBP20.1■□□□□ 0.81
HDDC3-205ENST00000559898 BLIDQ8IZY5 108 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 FBXO22Q8NEZ5 403 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 UNC45AQ9H3U1 944 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 TBC1D22BQ9NU19 505 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 PADI3Q9ULW8 664 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 GINS2Q9Y248 185 aa20.1■□□□□ 0.81
HDDC3-205ENST00000559898 IGSF9BQ9UPX0 1349 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 CPLX1O14810 134 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 BMP1P13497 986 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 IBSPP21815 317 aaPredicted RBP20.09■□□□□ 0.81
HDDC3-205ENST00000559898 TRIM22Q8IYM9 498 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 CRIPAKQ8N1N5 446 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 NECAB1Q8N987 351 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 BICD2Q8TD16 824 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 OXER1Q8TDS5 423 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 ADAMTS19Q8TE59 1207 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 SLC5A5Q92911 643 aa20.09■□□□□ 0.81
HDDC3-205ENST00000559898 ZNF668Q96K58 619 aaPredicted RBP20.09■□□□□ 0.81
HDDC3-205ENST00000559898 NOC2LQ9Y3T9 749 aaKnown RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms