RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 H3BNC9 293 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 ENPP3O14638 875 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 ARP10275 920 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 INSRRP14616 1297 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 CDC27P30260 824 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 NAPAP54920 295 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 IGBP1P78318 339 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 GPM6BQ13491 265 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 LPIN1Q14693 890 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 TSGA10IPQ3SY00 556 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 RNF20Q5VTR2 975 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 DHX32Q7L7V1 743 aaKnown RBP9.68□□□□□ -0.86
USP28-215ENST00000545608 TMEM192Q8IY95 271 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 MRPL38Q96DV4 380 aaKnown RBP9.68□□□□□ -0.86
USP28-215ENST00000545608 SAMD11Q96NU1 681 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 EPHX3Q9H6B9 360 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 UBE2ZQ9H832 354 aaPredicted RBP9.68□□□□□ -0.86
USP28-215ENST00000545608 RIC8AQ9NPQ8 531 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 KCNH7Q9NS40 1196 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 RBM28Q9NW13 759 aaKnown RBP9.68□□□□□ -0.86
USP28-215ENST00000545608 TMEM260Q9NX78 707 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 SLC9A2Q9UBY0 812 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 TUBE1Q9UJT0 475 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 CDY2AQ9Y6F7 541 aa9.68□□□□□ -0.86
USP28-215ENST00000545608 SMCO2A6NFE2 343 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 STXBP3O00186 592 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 ZBTB43O43298 467 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 ITGB3BPQ13352 177 aaPredicted RBP9.67□□□□□ -0.86
USP28-215ENST00000545608 RTN1Q16799 776 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 FBXO47Q5MNV8 452 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 RSPH3Q86UC2 560 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.67□□□□□ -0.86
USP28-215ENST00000545608 KHSRPQ92945 711 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP28-215ENST00000545608 IL17RAQ96F46 866 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 PCMTD1Q96MG8 357 aaPredicted RBP9.67□□□□□ -0.86
USP28-215ENST00000545608 ANO3Q9BYT9 981 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 AGO3Q9H9G7 860 aaKnown RBP9.67□□□□□ -0.86
USP28-215ENST00000545608 AGO4Q9HCK5 861 aaKnown RBP9.67□□□□□ -0.86
USP28-215ENST00000545608 JPH1Q9HDC5 661 aaPredicted RBP9.67□□□□□ -0.86
USP28-215ENST00000545608 CD320Q9NPF0 282 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 DOCK5Q9H7D0 1870 aa9.67□□□□□ -0.86
USP28-215ENST00000545608 NFASCO94856 1347 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 KLF18A0A0U1RQI7 1052 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 RRN3P2A6NIE6 340 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 GOLGA8AA7E2F4 631 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 GOLGA8BA8MQT2 603 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 MEIS1O00470 390 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 ADAMTS3O15072 1205 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 ATG7O95352 703 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 FOSP01100 380 aaPredicted RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 LINC00271P0C7V0 271 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 CPA1P15085 419 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 KCNA5P22460 613 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 CD52P31358 61 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 ADD1P35611 737 aaKnown RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 CLK2P49760 499 aaKnown RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 STAT5BP51692 787 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 ADCY7P51828 1080 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 ACTR2P61160 394 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 MRPS6P82932 125 aaKnown RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 PLCB4Q15147 1175 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 PTPROQ16827 1216 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 LEXMQ3ZCV2 418 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 CEP55Q53EZ4 464 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 TCEAL5Q5H9L2 206 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 PPP1R18Q6NYC8 613 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 CENPQQ7L2Z9 268 aaPredicted RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 RTN4RL1Q86UN2 441 aaPredicted RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 FIBCD1Q8N539 461 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 BANK1Q8NDB2 785 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 TRAPPC12Q8WVT3 735 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 LINC01599Q8WXQ3 324 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 SDF4Q9BRK5 362 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 FAM49AQ9H0Q0 323 aaPredicted RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 AZI2Q9H6S1 392 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 BARHL2Q9NY43 387 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 COL4A4P53420 1690 aaPredicted RBP9.66□□□□□ -0.86
USP28-215ENST00000545608 MICAL3Q7RTP6 2002 aa9.66□□□□□ -0.86
USP28-215ENST00000545608 BRWD1Q9NSI6 2320 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 DDX39AO00148 427 aaKnown RBP9.65□□□□□ -0.86
USP28-215ENST00000545608 CDC45O75419 566 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 CCNE2O96020 404 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 OATP04181 439 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 IL9P15248 144 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 BMPR1AP36894 532 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 SREBF1P36956 1147 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 TMEM62Q0P6H9 643 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 TSR1Q2NL82 804 aaKnown RBP9.65□□□□□ -0.86
USP28-215ENST00000545608 JAKMIP3Q5VZ66 844 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 TSHZ1Q6ZSZ6 1077 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 PLPPR4Q7Z2D5 763 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 NEK9Q8TD19 979 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 ZNF689Q96CS4 500 aaPredicted RBP9.65□□□□□ -0.86
USP28-215ENST00000545608 UIMC1Q96RL1 719 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 C1QTNF1Q9BXJ1 281 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 RC3H2Q9HBD1 1191 aaKnown RBP9.65□□□□□ -0.86
USP28-215ENST00000545608 NAP1L2Q9ULW6 460 aaPredicted RBP9.65□□□□□ -0.86
USP28-215ENST00000545608 PCDHA2Q9Y5H9 948 aa9.65□□□□□ -0.86
USP28-215ENST00000545608 IGKV6D-21A0A0A0MT36 114 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 POTEB3A0JP26 581 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms