RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NOC3LQ8WTT2 800 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 LZICQ8WZA0 190 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 C12orf42Q96LP6 360 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 AGBL1Q96MI9 1066 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CCDC28BQ9BUN5 200 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 PUS7LQ9H0K6 701 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 CCDC134Q9H6E4 229 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 NOD2Q9HC29 1040 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SLC39A2Q9NP94 309 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CHST12Q9NRB3 414 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SAGE1Q9NXZ1 904 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SLC12A6Q9UHW9 1150 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 RPL26L1Q9UNX3 145 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 GJA3Q9Y6H8 435 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 A0A087WWV3 80 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 DYTNA2CJ06 578 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 ENO4A6NNW6 628 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 ASAP2O43150 1006 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 CNGA1P29973 690 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 NFIAQ12857 509 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 DYNC1I2Q13409 638 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 NAA25Q14CX7 972 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 TBC1D10BQ4KMP7 808 aaPredicted RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 CFAP58Q5T655 872 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 MFSD4BQ5TF39 518 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SLC30A9Q6PML9 568 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 CROCCP2Q86T23 111 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RAVER1Q8IY67 606 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 CACNA2D3Q8IZS8 1091 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 GALNT15Q8N3T1 639 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 WASF1Q92558 559 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 DCPSQ96C86 337 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 SLC39A13Q96H72 371 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RNPC3Q96LT9 517 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 WDR18Q9BV38 432 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 TANGO6Q9C0B7 1094 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 TMBIM4Q9HC24 238 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 KCNMB3Q9NPA1 279 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 PCDH12Q9NPG4 1184 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 CAPN11Q9UMQ6 739 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 MAGEB6P1A0A0J9YX57 407 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 E7EWF7 191 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 ACTN4O43707 911 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 BUB1BO60566 1050 aaPredicted RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 HNRNPH3P31942 346 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 ZNF131P52739 623 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 MRPS35P82673 323 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 PDCLQ13371 301 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 MTMR3Q13615 1198 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SLC9C2Q5TAH2 1124 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SMYD5Q6GMV2 418 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 GBP7Q8N8V2 638 aaPredicted RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 SPDL1Q96EA4 605 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 OSBPL7Q9BZF2 842 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 BOLA2Q9H3K6 86 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 NDST4Q9H3R1 872 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 VRTNQ9H8Y1 702 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 CHCHD3Q9NX63 227 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 RWDD2AQ9UIY3 292 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 REXO2Q9Y3B8 237 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 HYOU1Q9Y4L1 999 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 TAF6LQ9Y6J9 622 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SPDYE5A6NIY4 337 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 GOLGA8FQ08AF8 430 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 GOLGA8DPQ0D2H9 430 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 E2F5Q15329 346 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SUPT20HL1Q3ZLR7 823 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RILPL1Q5EBL4 403 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 LBX2Q6XYB7 198 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RASAL3Q86YV0 1011 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 CREG2Q8IUH2 290 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RIN2Q8WYP3 895 aaPredicted RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 ZIM3Q96PE6 472 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 MED15Q96RN5 788 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 TDRD3Q9H7E2 651 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 GOPCQ9HD26 462 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RYDENQ9NUL5 291 aaKnown RBP5.75□□□□□ -1.49
USP28-213ENST00000544967 SLC5A4Q9NY91 659 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 RGL1Q9NZL6 768 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SAMM50Q9Y512 469 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 SNCAIPQ9Y6H5 919 aa5.75□□□□□ -1.49
USP28-213ENST00000544967 PLXNA1Q9UIW2 1896 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 DDTLA6NHG4 134 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 ADM5C9JUS6 153 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 G3V3G9 751 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 PJA2O43164 708 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 CTNND1O60716 968 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 ATP1A1P05023 1023 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 MYBP10242 640 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 CYP7A1P22680 504 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 CDC27P30260 824 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 SHMT1P34896 483 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 SKIV2L2P42285 1042 aaKnown RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 TM4SF4P48230 202 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 COL9A3Q14050 684 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 RASA3Q14644 834 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 CDC37Q16543 378 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 DCAF8Q5TAQ9 597 aa5.74□□□□□ -1.49
USP28-213ENST00000544967 GKAP1Q5VSY0 366 aaPredicted RBP5.74□□□□□ -1.49
USP28-213ENST00000544967 TTC19Q6DKK2 380 aaPredicted RBP5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms