RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 EMILIN3Q9NT22 766 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 DDX25Q9UHL0 483 aaKnown RBP16.49■□□□□ 0.23
CHFR-223ENST00000544268 WDR46O15213 610 aaKnown RBP16.49■□□□□ 0.23
CHFR-223ENST00000544268 FXR2P51116 673 aaKnown RBP eCLIP16.49■□□□□ 0.23
CHFR-223ENST00000544268 CNNM4Q6P4Q7 775 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 SLC30A10Q6XR72 485 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 JAKMIP2Q96AA8 810 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 GLT8D2Q9H1C3 349 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 MMRN2Q9H8L6 949 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 ARHGAP20Q9P2F6 1191 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 FAM169AQ9Y6X4 670 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 ZHX2Q9Y6X8 837 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 MYH7BA7E2Y1 1941 aa16.49■□□□□ 0.23
CHFR-223ENST00000544268 BICDL2A1A5D9 508 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 CTAGE15A4D2H0 777 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 PDE2AO00408 941 aaPredicted RBP16.48■□□□□ 0.23
CHFR-223ENST00000544268 EBAG9O00559 213 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 USP2O75604 605 aaPredicted RBP16.48■□□□□ 0.23
CHFR-223ENST00000544268 CTAGE8P0CG41 777 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 VCAM1P19320 739 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 EPHX2P34913 555 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 WDR93Q6P2C0 686 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 TRAPPC11Q7Z392 1133 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 CTAGE6Q86UF2 777 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 CTAGE4Q8IX94 777 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 NELFCDQ8IXH7 590 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 ANKRD13CQ8N6S4 541 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 ZNF280CQ8ND82 737 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 PSMB7Q99436 277 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 WDR18Q9BV38 432 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 MLXIPQ9HAP2 919 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 GLTPD2A6NH11 291 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 BACE1P56817 501 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 TSR1Q2NL82 804 aaKnown RBP16.48■□□□□ 0.23
CHFR-223ENST00000544268 UNC13DQ70J99 1090 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 GSPT2Q8IYD1 628 aaKnown RBP16.48■□□□□ 0.23
CHFR-223ENST00000544268 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.48■□□□□ 0.23
CHFR-223ENST00000544268 NDST4Q9H3R1 872 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 SMARCAL1Q9NZC9 954 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 SIK3Q9Y2K2 1263 aa16.48■□□□□ 0.23
CHFR-223ENST00000544268 POTEB3A0JP26 581 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 POTECB2RU33 542 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 GRIN3BO60391 1043 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 ZBED6P86452 979 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 AMPD3Q01432 767 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 VWA3BQ502W6 1294 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 POTEBQ6S5H4 581 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 LRRC55Q6ZSA7 311 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 TANGO6Q9C0B7 1094 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 AS3MTQ9HBK9 375 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 CAPN6Q9Y6Q1 641 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 USP14P54578 494 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 SETQ01105 290 aaPredicted RBP16.47■□□□□ 0.23
CHFR-223ENST00000544268 KRT79Q5XKE5 535 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 USP50Q70EL3 339 aaPredicted RBP16.47■□□□□ 0.23
CHFR-223ENST00000544268 CCDC47Q96A33 483 aaKnown RBP16.47■□□□□ 0.23
CHFR-223ENST00000544268 DNAJC19Q96DA6 116 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 ANO3Q9BYT9 981 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 MAGEF1Q9HAY2 307 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 PHIPQ8WWQ0 1821 aa16.47■□□□□ 0.23
CHFR-223ENST00000544268 TTC36A6NLP5 189 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 HOXA13P31271 388 aaPredicted RBP16.46■□□□□ 0.23
CHFR-223ENST00000544268 WHAMMP3Q1A5X7 153 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 TMEM266Q2M3C6 531 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 FBXW10Q5XX13 1052 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 PRPF38AQ8NAV1 312 aaKnown RBP16.46■□□□□ 0.23
CHFR-223ENST00000544268 BORCS6Q96GS4 357 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 CRACR2AQ9BSW2 395 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 HAUS4Q9H6D7 363 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 RPAP3Q9H6T3 665 aaPredicted RBP16.46■□□□□ 0.23
CHFR-223ENST00000544268 EHD2Q9NZN4 543 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 SALL4Q9UJQ4 1053 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 KIAA1024Q9UPX6 916 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 LRRC53A6NM62 1247 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 MARCH6O60337 910 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 CCT5P48643 541 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 COASYQ13057 564 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 TMEM119Q4V9L6 283 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 NOL9Q5SY16 702 aaKnown RBP16.46■□□□□ 0.23
CHFR-223ENST00000544268 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.46■□□□□ 0.23
CHFR-223ENST00000544268 RRAGAQ7L523 313 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 NOC3LQ8WTT2 800 aaKnown RBP16.46■□□□□ 0.23
CHFR-223ENST00000544268 ERGIC2Q96RQ1 377 aa16.46■□□□□ 0.23
CHFR-223ENST00000544268 ZC3H4Q9UPT8 1303 aaKnown RBP16.45■□□□□ 0.22
CHFR-223ENST00000544268 FLOT1O75955 427 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 HMGCS2P54868 508 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 AP3B2Q13367 1082 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 ORC2Q13416 577 aaPredicted RBP16.45■□□□□ 0.22
CHFR-223ENST00000544268 VGLL4Q14135 290 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 LDHDQ86WU2 507 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 TBC1D5Q92609 795 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 NLRC4Q9NPP4 1024 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 ZNF536O15090 1300 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 MEIS1O00470 390 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 CXCR5P32302 372 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 EIF4A3P38919 411 aaKnown RBP16.45■□□□□ 0.22
CHFR-223ENST00000544268 EHHADHQ08426 723 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 KCTD19Q17RG1 926 aaPredicted RBP16.45■□□□□ 0.22
CHFR-223ENST00000544268 SKIDA1Q1XH10 827 aa16.45■□□□□ 0.22
CHFR-223ENST00000544268 FKBP15Q5T1M5 1219 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms