RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 TUBE1Q9UJT0 475 aa16.12■□□□□ 0.17
NKX3-1-202ENST00000523261 HCFC2Q9Y5Z7 792 aa16.12■□□□□ 0.17
NKX3-1-202ENST00000523261 HOXA13P31271 388 aaPredicted RBP16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 PPFIA1Q13136 1202 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 SEMA3FQ13275 785 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 NEDD9Q14511 834 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 MARCH8Q5T0T0 291 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 ZC3H14Q6PJT7 736 aaKnown RBP16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 RIN2Q8WYP3 895 aaPredicted RBP16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 GPATCH3Q96I76 525 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 TMX1Q9H3N1 280 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 JMJD4Q9H9V9 463 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 TYW1Q9NV66 732 aaKnown RBP16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 MAP3K20Q9NYL2 800 aaKnown RBP16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 FAM208BQ5VWN6 2430 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 LOXHD1Q8IVV2 1947 aa16.11■□□□□ 0.17
NKX3-1-202ENST00000523261 TBKBP1A7MCY6 615 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 EOMESO95936 686 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 IBSPP21815 317 aaPredicted RBP16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 SARSP49591 514 aaKnown RBP16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 ATXN1P54253 815 aaKnown RBP16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 PLCB3Q01970 1234 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 TDGQ13569 410 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 ALX1Q15699 326 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 GRIK4Q16099 956 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 KIAA0319Q5VV43 1072 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 KIAA1841Q6NSI8 718 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 SUMF1Q8NBK3 374 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 CYP26B1Q9NR63 512 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 RNF216Q9NWF9 866 aaPredicted RBP16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 FBXL21Q9UKT6 434 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 DUSP12Q9UNI6 340 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 DENND4AQ7Z401 1863 aa16.1■□□□□ 0.17
NKX3-1-202ENST00000523261 SPATA31C2B4DYI2 1134 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 SDHBP21912 280 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 PAK2Q13177 524 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 COL9A2Q14055 689 aaPredicted RBP16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 GNPTABQ3T906 1256 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 FAM102BQ5T8I3 360 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 INPP4AQ96PE3 977 aaPredicted RBP16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 AMNQ9BXJ7 453 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 CWH43Q9H720 699 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 VAT1LQ9HCJ6 419 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 PUF60Q9UHX1 559 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 RALYQ9UKM9 306 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 PCDHB7Q9Y5E2 793 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 IGSF9BQ9UPX0 1349 aa16.09■□□□□ 0.17
NKX3-1-202ENST00000523261 DHX16O60231 1041 aaKnown RBP16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 SP9P0CG40 484 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 LAG3P18627 525 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 MRPS9P82933 396 aaKnown RBP16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 SP4Q02446 784 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 ASPRV1Q53RT3 343 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 RARS2Q5T160 578 aaKnown RBP16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 IER5Q5VY09 327 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 C12orf76Q8N812 135 aaPredicted RBP16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 PNMA1Q8ND90 353 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 ZBTB10Q96DT7 871 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 FAM49AQ9H0Q0 323 aaPredicted RBP16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 DBR1Q9UK59 544 aaKnown RBP16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 TRPV2Q9Y5S1 764 aa16.08■□□□□ 0.16
NKX3-1-202ENST00000523261 MGEA5O60502 916 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 PPP1R11O60927 126 aaPredicted RBP16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 FGAP02671 866 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 RPLP2P05387 115 aaKnown RBP16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 TMEM62Q0P6H9 643 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 ATAT1Q5SQI0 421 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 KANK3Q6NY19 840 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 TMC7Q7Z402 723 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 DGKHQ86XP1 1220 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 SAMD3Q8N6K7 520 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 ZKSCAN3Q9BRR0 538 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 PCDHA1Q9Y5I3 950 aa16.07■□□□□ 0.16
NKX3-1-202ENST00000523261 CACNA1IQ9P0X4 2223 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 KRBA1A5PL33 1030 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 C2orf71A6NGG8 1288 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 FIBPO43427 364 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 CLASP2O75122 1294 aaKnown RBP16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 ADRB1P08588 477 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 MRPL43Q8N983 215 aaKnown RBP16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 KCNK12Q9HB15 430 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 DDX19BQ9UMR2 479 aa16.06■□□□□ 0.16
NKX3-1-202ENST00000523261 STK25O00506 426 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 NARSO43776 548 aaKnown RBP16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 STAM2O75886 525 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 MARK3P27448 753 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 PDE4AP27815 886 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 TCF7P36402 384 aaPredicted RBP16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 IGBP1P78318 339 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 TBC1D8BQ0IIM8 1120 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 SMC1AQ14683 1233 aaKnown RBP16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 TMEM266Q2M3C6 531 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 XRRA1Q6P2D8 792 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 KCNT2Q6UVM3 1135 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 FCHSD1Q86WN1 690 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 MIER1Q8N108 512 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 FEZF2Q8TBJ5 459 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 PI4K2BQ8TCG2 481 aa16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 ACSF2Q96CM8 615 aaPredicted RBP16.05■□□□□ 0.16
NKX3-1-202ENST00000523261 SENP7Q9BQF6 1050 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms