RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 GALK1P51570 392 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 NR0B2Q15466 257 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 INTS5Q6P9B9 1019 aaKnown RBP9.6□□□□□ -0.87
NUP54-215ENST00000514313 TTLL7Q6ZT98 887 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 NLRX1Q86UT6 975 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 JADE3Q92613 823 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 LRGUKQ96M69 825 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 C19orf44Q9H6X5 657 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 DNAJC28Q9NX36 388 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 CCDC39Q9UFE4 941 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 PPP2R3BQ9Y5P8 575 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.59□□□□□ -0.87
NUP54-215ENST00000514313 DBHP09172 617 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 CLEC2LP0C7M8 214 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 ENPP1P22413 925 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 TRHRP34981 398 aaPredicted RBP9.59□□□□□ -0.87
NUP54-215ENST00000514313 MANFP55145 182 aaKnown RBP9.59□□□□□ -0.87
NUP54-215ENST00000514313 SRSF2Q01130 221 aaKnown RBP9.59□□□□□ -0.87
NUP54-215ENST00000514313 GRIN1Q05586 938 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 MOGSQ13724 837 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 MINDY4Q4G0A6 757 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 KSR2Q6VAB6 950 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 NFXL1Q6ZNB6 911 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 CERS3Q8IU89 383 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 FLCNQ8NFG4 579 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 NUP88Q99567 741 aaPredicted RBP9.59□□□□□ -0.87
NUP54-215ENST00000514313 PDGFDQ9GZP0 370 aaPredicted RBP9.59□□□□□ -0.87
NUP54-215ENST00000514313 TNFRSF12AQ9NP84 129 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 GPR160Q9UJ42 338 aa9.59□□□□□ -0.87
NUP54-215ENST00000514313 PLEKHD1A6NEE1 506 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 MSTNO14793 375 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 COBLO75128 1261 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 HPXP02790 462 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 FUT4P22083 530 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 ADCY1Q08828 1119 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 FSCN1Q16658 493 aaKnown RBP9.58□□□□□ -0.88
NUP54-215ENST00000514313 CT83Q5H943 113 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 SLC23A3Q6PIS1 610 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 MILR1Q7Z6M3 343 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 TRIM48Q8IWZ4 208 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 C7orf31Q8N865 590 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 ARRDC4Q8NCT1 418 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 ASB15Q8WXK1 588 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 ERCC4Q92889 916 aaPredicted RBP9.58□□□□□ -0.88
NUP54-215ENST00000514313 CCDC120Q96HB5 630 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 AIFM3Q96NN9 605 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 ANO3Q9BYT9 981 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 QRSL1Q9H0R6 528 aaKnown RBP9.58□□□□□ -0.88
NUP54-215ENST00000514313 POFUT1Q9H488 388 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 RC3H2Q9HBD1 1191 aaKnown RBP9.58□□□□□ -0.88
NUP54-215ENST00000514313 CHST12Q9NRB3 414 aa9.58□□□□□ -0.88
NUP54-215ENST00000514313 SRGAP3O43295 1099 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 ASGR2P07307 311 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 GTF2H3Q13889 308 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 TOR2AQ5JU69 321 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 ZBTB41Q5SVQ8 909 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 SYCP2LQ5T4T6 812 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 PPP4R4Q6NUP7 873 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 RTN4RL1Q86UN2 441 aaPredicted RBP9.57□□□□□ -0.88
NUP54-215ENST00000514313 NME9Q86XW9 330 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 SIRT2Q8IXJ6 389 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 TIFAQ96CG3 184 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 SHISA4Q96DD7 197 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 GBP4Q96PP9 640 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 PRDM11Q9NQV5 511 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 EDARQ9UNE0 448 aa9.57□□□□□ -0.88
NUP54-215ENST00000514313 ZC3H12DA2A288 527 aaKnown RBP9.56□□□□□ -0.88
NUP54-215ENST00000514313 ELL2O00472 640 aaPredicted RBP9.56□□□□□ -0.88
NUP54-215ENST00000514313 MED26O95402 600 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 OSMP13725 252 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 VCAM1P19320 739 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 AGXTP21549 392 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 MTNR1BP49286 362 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 HERVK_113P62684 666 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 PAN2Q504Q3 1202 aaKnown RBP9.56□□□□□ -0.88
NUP54-215ENST00000514313 CCDC62Q6P9F0 684 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 ESPNLQ6ZVH7 1005 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 CILP2Q8IUL8 1156 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 PHYKPLQ8IUZ5 450 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 TTLL11Q8NHH1 800 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 FOXRED1Q96CU9 486 aaPredicted RBP9.56□□□□□ -0.88
NUP54-215ENST00000514313 RPS6KC1Q96S38 1066 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 PAK6Q9NQU5 681 aaPredicted RBP9.56□□□□□ -0.88
NUP54-215ENST00000514313 NUDT5Q9UKK9 219 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 GPR45Q9Y5Y3 372 aa9.56□□□□□ -0.88
NUP54-215ENST00000514313 UBA6A0AVT1 1052 aaPredicted RBP9.55□□□□□ -0.88
NUP54-215ENST00000514313 SPINK2P20155 84 aa9.55□□□□□ -0.88
NUP54-215ENST00000514313 C5AR1P21730 350 aa9.55□□□□□ -0.88
NUP54-215ENST00000514313 BIRC2Q13490 618 aa9.55□□□□□ -0.88
NUP54-215ENST00000514313 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.55□□□□□ -0.88
NUP54-215ENST00000514313 DTX1Q86Y01 620 aa9.55□□□□□ -0.88
NUP54-215ENST00000514313 EAF2Q96CJ1 260 aaPredicted RBP9.55□□□□□ -0.88
NUP54-215ENST00000514313 SLC39A13Q96H72 371 aa9.55□□□□□ -0.88
NUP54-215ENST00000514313 ZNF277Q9NRM2 450 aaPredicted RBP9.55□□□□□ -0.88
NUP54-215ENST00000514313 ADAMTS6Q9UKP5 1117 aa9.55□□□□□ -0.88
NUP54-215ENST00000514313 PNLIPP16233 465 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 FAHP16930 419 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 GDNFP39905 211 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 ARL4AP40617 200 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 GRM3Q14832 879 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms