RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 CCDC50Q8IVM0 306 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 RDH13Q8NBN7 331 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 POP1Q99575 1024 aaKnown RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 TSG101Q99816 390 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 SRP68Q9UHB9 627 aaKnown RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 ATP6V0A2Q9Y487 856 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 STRCP1A6NGW2 1772 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 LOC102724428A0A0B4J2F2 783 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 SFI1A8K8P3 1242 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 E9PMD0 336 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 MEIS1O00470 390 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 MAP3K13O43283 966 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 SMIM24O75264 130 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 GH1P01241 217 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 SIK1P57059 783 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 AMPD3Q01432 767 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 SLC35G1Q2M3R5 365 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 ARL6IP4Q66PJ3 421 aaKnown RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 DENND2CQ68D51 928 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 CLEC10AQ8IUN9 316 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 SH3RF3Q8TEJ3 882 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 PWWP2AQ96N64 755 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 MMTAG2Q9BU76 263 aaKnown RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 DDX23Q9BUQ8 820 aaKnown RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 ERVK-5Q9HDB9 667 aa8.29□□□□□ -1.08
NEDD9-208ENST00000504387 LUC7LQ9NQ29 371 aaKnown RBP8.29□□□□□ -1.08
NEDD9-208ENST00000504387 TNS3Q68CZ2 1445 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 GOLGA6L10A0A0M3HER8 536 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 SLC37A4O43826 429 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 HIBADHP31937 336 aaKnown RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ADAM9Q13443 819 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 UBE2SQ16763 222 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ASTE1Q2TB18 679 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 MEX3CQ5U5Q3 659 aaKnown RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 SLC30A10Q6XR72 485 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 PHLDB2Q86SQ0 1253 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 LARP4BQ92615 738 aaKnown RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ELMO3Q96BJ8 720 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 C18orf8Q96DM3 657 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 FAM118BQ9BPY3 351 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 PYM1Q9BRP8 204 aaKnown RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 MXD3Q9BW11 206 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ZMYND12Q9H0C1 365 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 PCDHB13Q9Y5F0 798 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 KIF5BP33176 963 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 POLE2P56282 527 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ECM1Q16610 540 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ARHGAP44Q17R89 818 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 NBPF20Q3BBV1 942 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 CENPPQ6IPU0 288 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 ZSCAN29Q8IWY8 852 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 MYOCDQ8IZQ8 938 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 RNF25Q96BH1 459 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 OSBPL1AQ9BXW6 950 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 GPCPD1Q9NPB8 672 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 NOP53Q9NZM5 478 aaKnown RBP8.28□□□□□ -1.08
NEDD9-208ENST00000504387 COL4A3BPQ9Y5P4 624 aa8.28□□□□□ -1.08
NEDD9-208ENST00000504387 A0A1W2PQJ5 194 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 KLRF2D3W0D1 207 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 IRF6O14896 467 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 NPM3O75607 178 aaKnown RBP8.27□□□□□ -1.08
NEDD9-208ENST00000504387 CALM1P0DP23 149 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 CALM2P0DP24 149 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 CALM3P0DP25 149 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 NQO1P15559 274 aaKnown RBP8.27□□□□□ -1.08
NEDD9-208ENST00000504387 KCNH2Q12809 1159 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 GRB10Q13322 594 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 BIRC3Q13489 604 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 UBE4AQ14139 1066 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 PLS1Q14651 629 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 PLCB4Q15147 1175 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 ERMARDQ5T6L9 678 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 TXNRD3Q86VQ6 643 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 GLYCTKQ8IVS8 523 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 CD302Q8IX05 232 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 RNF10Q8N5U6 811 aaKnown RBP8.27□□□□□ -1.08
NEDD9-208ENST00000504387 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.27□□□□□ -1.088e-8■■□□□ 12.3
NEDD9-208ENST00000504387 PLA2G12BQ9BX93 195 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 FAM129AQ9BZQ8 928 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 BLOC1S4Q9NUP1 217 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 INTUQ9ULD6 942 aa8.27□□□□□ -1.08
NEDD9-208ENST00000504387 A0A1B0GVG6 124 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 SPDYE5A6NIY4 337 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 LRRN2O75325 713 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 FGFR1OPO95684 399 aaKnown RBP8.27□□□□□ -1.09
NEDD9-208ENST00000504387 FGFR2P21802 821 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 IL6STP40189 918 aaPredicted RBP8.27□□□□□ -1.09
NEDD9-208ENST00000504387 TUBP50607 506 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 PMS2P54278 862 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 INHBEP58166 350 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 ITIH3Q06033 890 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 NONOQ15233 471 aaKnown RBP eCLIP8.27□□□□□ -1.09
NEDD9-208ENST00000504387 CALCRLQ16602 461 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 TBC1D10BQ4KMP7 808 aaPredicted RBP8.27□□□□□ -1.09
NEDD9-208ENST00000504387 ANKRD20A2Q5SQ80 823 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 ANKRD20A1Q5TYW2 823 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 ANKRD20A3Q5VUR7 823 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 ZNF746Q6NUN9 644 aaPredicted RBP8.27□□□□□ -1.09
NEDD9-208ENST00000504387 ZNF662Q6ZS27 426 aa8.27□□□□□ -1.09
NEDD9-208ENST00000504387 CPNE8Q86YQ8 564 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms