RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 R3HDM1Q15032 1099 aaKnown RBP14.27□□□□□ -0.13
USP40-208ENST00000450966 TMED2Q15363 201 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 FAM133AQ8N9E0 248 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 MASTLQ96GX5 879 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP40-208ENST00000450966 FAM96AQ9H5X1 160 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 WDR70Q9NW82 654 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 CD2BP2O95400 341 aaKnown RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 ATG16L1Q676U5 607 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 SIX5Q8N196 739 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 TRAPPC9Q96Q05 1148 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 PKD2L1Q9P0L9 805 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 MRPL11Q9Y3B7 192 aaKnown RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 USP15Q9Y4E8 981 aaPredicted RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 ATP6V1G2O95670 118 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 UBTFL6P0CB48 400 aaPredicted RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 NDUFA5Q16718 116 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 MPP4Q96JB8 637 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 FUT8Q9BYC5 575 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 L2HGDHQ9H9P8 463 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 ARHGAP26Q9UNA1 814 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 COPG1Q9Y678 874 aaKnown RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 ATP5JP18859 108 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 RPS6KA2Q15349 733 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 FSBPO95073 299 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 H2AFZP0C0S5 128 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 ADCY7P51828 1080 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 H2AFVQ71UI9 128 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 GMEB1Q9Y692 573 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 ZNF804BA4D1E1 1349 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 SLCO1A2P46721 670 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 RPS6KA3P51812 740 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 KRR1Q13601 381 aaKnown RBP14.26□□□□□ -0.13
USP40-208ENST00000450966 SESN1Q9Y6P5 492 aa14.26□□□□□ -0.13
USP40-208ENST00000450966 PALLDQ8WX93 1383 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 IREB2P48200 963 aaKnown RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 TOGARAM2Q6ZUX3 1019 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 SUCLG2Q96I99 432 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 PLIN2Q99541 437 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 MTRQ99707 1265 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 RTEL1Q9NZ71 1219 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 CARD8Q9Y2G2 431 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 POC1B-GALNT4F8VUJ3 575 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 POTEEQ6S8J3 1075 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 PATL1Q86TB9 770 aaKnown RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 ZC3H15Q8WU90 426 aaKnown RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 BAG5Q9UL15 447 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 H0YCG3 227 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 ZNF174Q15697 407 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 STMN3Q9NZ72 180 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 ARHGEF35A5YM69 484 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 CALUO43852 315 aaPredicted RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 HSPA8P11142 646 aaKnown RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 RXRAP19793 462 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 CARSP49589 748 aaKnown RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 CNGA3Q16281 694 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 RNF34Q969K3 372 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 CNBD2Q96M20 576 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 ARMT1Q9H993 441 aa14.25□□□□□ -0.13
USP40-208ENST00000450966 CORO1CQ9ULV4 474 aaPredicted RBP14.25□□□□□ -0.13
USP40-208ENST00000450966 MFAP3LO75121 409 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 MARK3P27448 753 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 SCTRP47872 440 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 KRT76Q01546 638 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 RASSF7Q02833 373 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 CENPUQ71F23 418 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 PHKBQ93100 1093 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 KIFC2Q96AC6 838 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 TGS1Q96RS0 853 aaKnown RBP14.24□□□□□ -0.13
USP40-208ENST00000450966 KDM4CQ9H3R0 1056 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.24□□□□□ -0.13
USP40-208ENST00000450966 GPAA1O43292 621 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 NQO1P15559 274 aaKnown RBP14.24□□□□□ -0.13
USP40-208ENST00000450966 PDE6AP16499 860 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 ART3Q13508 389 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 NYAP1Q6ZVC0 841 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 EZH1Q92800 747 aaPredicted RBP14.24□□□□□ -0.13
USP40-208ENST00000450966 CUEDC2Q9H467 287 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 ATAD3AQ9NVI7 634 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 ATXN10Q9UBB4 475 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 LCMT1Q9UIC8 334 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 STRIP2Q9ULQ0 834 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 IGF2BP3O00425 579 aaKnown RBP eCLIP14.24□□□□□ -0.13
USP40-208ENST00000450966 JAK2O60674 1132 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 AGBL2Q5U5Z8 902 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 ST13P5Q8NFI4 369 aaPredicted RBP14.24□□□□□ -0.13
USP40-208ENST00000450966 GJD4Q96KN9 370 aaPredicted RBP14.24□□□□□ -0.13
USP40-208ENST00000450966 KAT6BQ8WYB5 2073 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 CCDC22O60826 627 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 GHRP10912 638 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 PDHBP11177 359 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 CA4P22748 312 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 JADE1Q6IE81 842 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 AGLP35573 1532 aa14.24□□□□□ -0.13
USP40-208ENST00000450966 RSPH10B2B2RC85 870 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 HNRNPCL2B2RXH8 293 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 INHBAP08476 426 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 RSPH10BP0C881 870 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 ATP4AP20648 1035 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms