RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CHRNDQ07001 517 aa14.31□□□□□ -0.12
NUP54-201ENST00000264883 DDX42Q86XP3 938 aaKnown RBP eCLIP14.31□□□□□ -0.12
NUP54-201ENST00000264883 USP38Q8NB14 1042 aa14.31□□□□□ -0.12
NUP54-201ENST00000264883 EZH1Q92800 747 aaPredicted RBP14.31□□□□□ -0.12
NUP54-201ENST00000264883 INPP4AQ96PE3 977 aaPredicted RBP14.31□□□□□ -0.12
NUP54-201ENST00000264883 PAIP2Q9BPZ3 127 aaKnown RBP14.31□□□□□ -0.12
NUP54-201ENST00000264883 ELAC2Q9BQ52 826 aaKnown RBP14.31□□□□□ -0.12
NUP54-201ENST00000264883 EDEM3Q9BZQ6 932 aa14.31□□□□□ -0.12
NUP54-201ENST00000264883 ARPP21Q9UBL0 812 aaPredicted RBP14.31□□□□□ -0.12
NUP54-201ENST00000264883 MYH7BA7E2Y1 1941 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.3□□□□□ -0.12
NUP54-201ENST00000264883 LRRD1A4D1F6 860 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 SPDYE3A6NKU9 549 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 IGF2BP3O00425 579 aaKnown RBP eCLIP14.3□□□□□ -0.12
NUP54-201ENST00000264883 PLSCR1O15162 318 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 PALMO75781 387 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 FTCDO95954 541 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 MMEP08473 750 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 MXRA7P84157 204 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 GFPT1Q06210 699 aaPredicted RBP14.3□□□□□ -0.12
NUP54-201ENST00000264883 ORC2Q13416 577 aaPredicted RBP14.3□□□□□ -0.12
NUP54-201ENST00000264883 UBE4AQ14139 1066 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 TXNRD1Q16881 649 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 SBK1Q52WX2 424 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 MIIPQ5JXC2 388 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 CNNM4Q6P4Q7 775 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 CCDC84Q86UT8 332 aaPredicted RBP14.3□□□□□ -0.12
NUP54-201ENST00000264883 GPIHBP1Q8IV16 184 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 C7orf25Q9BPX7 421 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 NEUROG2Q9H2A3 272 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 ECT2Q9H8V3 914 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 ATP8A2Q9NTI2 1148 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 TCP11L1Q9NUJ3 509 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 ABCF3Q9NUQ8 709 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 RGL1Q9NZL6 768 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 ABCF2Q9UG63 623 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 A8MUI8 341 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 RARAP10276 462 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 CHN1P15882 459 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 SLC1A4P43007 532 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 CCDC38Q502W7 563 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 FOXR2Q6PJQ5 311 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 LRRC34Q8IZ02 419 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 GALNT15Q8N3T1 639 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 ANKRD27Q96NW4 1050 aa14.3□□□□□ -0.12
NUP54-201ENST00000264883 M0R2N6 131 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 SART1O43290 800 aaKnown RBP14.29□□□□□ -0.12
NUP54-201ENST00000264883 UBOX5O94941 541 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 PYGLP06737 847 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 CAVIN4Q5BKX8 364 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 CHADLQ6NUI6 762 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 MTHFD1LQ6UB35 978 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 KLHL23Q8NBE8 558 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 ZFAND2BQ8WV99 257 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 TLCD1Q96CP7 247 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 CRNKL1Q9BZJ0 848 aaKnown RBP14.29□□□□□ -0.12
NUP54-201ENST00000264883 ARHGEF10LQ9HCE6 1279 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 RPS6KL1Q9Y6S9 549 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 FLT3P36888 993 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 ATP11AP98196 1134 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 MEI1Q5TIA1 1274 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 TRIM68Q6AZZ1 485 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 TMC4Q7Z404 712 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 DGKHQ86XP1 1220 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 B4GALNT2Q8NHY0 566 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 TEKT4Q8WW24 435 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 ANKS1AQ92625 1134 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 PLCD4Q9BRC7 762 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 FAM207AQ9NSI2 230 aaPredicted RBP14.29□□□□□ -0.12
NUP54-201ENST00000264883 TMEM59LQ9UK28 342 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 PNMA2Q9UL42 364 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 STK38LQ9Y2H1 464 aa14.29□□□□□ -0.12
NUP54-201ENST00000264883 TAF1P21675 1872 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 LRRC53A6NM62 1247 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 EPHB6O15197 1021 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 KRT16P08779 473 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 ZNF131P52739 623 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 LACTBP83111 547 aaPredicted RBP14.28□□□□□ -0.12
NUP54-201ENST00000264883 EHHADHQ08426 723 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 PDE4DQ08499 809 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 NFIXQ14938 502 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 TPTE2Q6XPS3 522 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 RRAGAQ7L523 313 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 KCNV2Q8TDN2 545 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 KLHL29Q96CT2 875 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 SELENOSQ9BQE4 189 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 LUC7LQ9NQ29 371 aaKnown RBP14.28□□□□□ -0.12
NUP54-201ENST00000264883 ADAM22Q9P0K1 906 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 PACSIN2Q9UNF0 486 aaPredicted RBP14.28□□□□□ -0.12
NUP54-201ENST00000264883 MAST2Q6P0Q8 1798 aa14.28□□□□□ -0.12
NUP54-201ENST00000264883 BAZ2AQ9UIF9 1905 aaKnown RBP14.28□□□□□ -0.12
NUP54-201ENST00000264883 USP17L12C9JPN9 530 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 USP17L21D6R901 530 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 SNAP23O00161 211 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 VIMP08670 466 aaKnown RBP14.27□□□□□ -0.12
NUP54-201ENST00000264883 MYBL1P10243 752 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 MSH2P43246 934 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 APLFQ8IW19 511 aaPredicted RBP14.27□□□□□ -0.12
NUP54-201ENST00000264883 ATXN2LQ8WWM7 1075 aaKnown RBP14.27□□□□□ -0.12
NUP54-201ENST00000264883 EPAS1Q99814 870 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms