RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 N4BP3O15049 544 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 CHMP2AO43633 222 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 PSMD2Q13200 908 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 PWP2Q15269 919 aaKnown RBP25.1■■□□□ 1.61
CDX1-201ENST00000231656 NYAP1Q6ZVC0 841 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 CATSPER3Q86XQ3 398 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 PRIMPOLQ96LW4 560 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 VPS16Q9H269 839 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 ZNF236Q9UL36 1845 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 DDX39AO00148 427 aaKnown RBP25.1■■□□□ 1.61
CDX1-201ENST00000231656 SPATA31C1P0DKV0 1188 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 RPA1P27694 616 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 CENPPQ6IPU0 288 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 MORC4Q8TE76 937 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 SEMA6BQ9H3T3 888 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 DOCK5Q9H7D0 1870 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 POTEFA5A3E0 1075 aa25.09■■□□□ 1.61
CDX1-201ENST00000231656 ICAM3P32942 547 aa25.09■■□□□ 1.61
CDX1-201ENST00000231656 ADKP55263 362 aaKnown RBP25.09■■□□□ 1.61
CDX1-201ENST00000231656 POTEGQ6S5H5 508 aa25.09■■□□□ 1.61
CDX1-201ENST00000231656 GUF1Q8N442 669 aaKnown RBP25.09■■□□□ 1.61
CDX1-201ENST00000231656 CSGALNACT2Q8N6G5 542 aa25.09■■□□□ 1.61
CDX1-201ENST00000231656 TRMT1Q9NXH9 659 aaKnown RBP25.09■■□□□ 1.61
CDX1-201ENST00000231656 SLC15A5A6NIM6 579 aa25.08■■□□□ 1.61
CDX1-201ENST00000231656 ECM2O94769 699 aaPredicted RBP25.08■■□□□ 1.61
CDX1-201ENST00000231656 IDEP14735 1019 aa25.08■■□□□ 1.61
CDX1-201ENST00000231656 KCNA2P16389 499 aa25.08■■□□□ 1.61
CDX1-201ENST00000231656 SLC12A3P55017 1021 aa25.08■■□□□ 1.61
CDX1-201ENST00000231656 SEPT14Q6ZU15 432 aa25.08■■□□□ 1.61
CDX1-201ENST00000231656 DPP9Q86TI2 863 aa25.08■■□□□ 1.61
CDX1-201ENST00000231656 EIF2AK1Q9BQI3 630 aaKnown RBP25.08■■□□□ 1.61
CDX1-201ENST00000231656 ASB14A6NK59 587 aa25.08■■□□□ 1.6
CDX1-201ENST00000231656 AKR1B15C9JRZ8 316 aaPredicted RBP25.08■■□□□ 1.6
CDX1-201ENST00000231656 TPM2P07951 284 aa25.08■■□□□ 1.6
CDX1-201ENST00000231656 TNNT1P13805 278 aa25.08■■□□□ 1.6
CDX1-201ENST00000231656 COASYQ13057 564 aa25.08■■□□□ 1.6
CDX1-201ENST00000231656 EEPD1Q7L9B9 569 aa25.08■■□□□ 1.6
CDX1-201ENST00000231656 BMP2KQ9NSY1 1161 aaPredicted RBP25.08■■□□□ 1.6
CDX1-201ENST00000231656 SSBP05455 408 aaKnown RBP eCLIP25.07■■□□□ 1.6
CDX1-201ENST00000231656 CYP11B2P19099 503 aa25.07■■□□□ 1.6
CDX1-201ENST00000231656 HTRA3P83110 453 aa25.07■■□□□ 1.6
CDX1-201ENST00000231656 RBL2Q08999 1139 aa25.07■■□□□ 1.6
CDX1-201ENST00000231656 ZNF467Q7Z7K2 595 aaPredicted RBP25.07■■□□□ 1.6
CDX1-201ENST00000231656 GPBP1Q86WP2 473 aa25.07■■□□□ 1.6
CDX1-201ENST00000231656 PPP1R13BQ96KQ4 1090 aa25.07■■□□□ 1.6
CDX1-201ENST00000231656 BAG1Q99933 345 aaPredicted RBP25.07■■□□□ 1.6
CDX1-201ENST00000231656 HSD17B14Q9BPX1 270 aa25.07■■□□□ 1.6
CDX1-201ENST00000231656 POLR3CQ9BUI4 534 aaPredicted RBP25.07■■□□□ 1.6
CDX1-201ENST00000231656 DIS3Q9Y2L1 958 aaKnown RBP25.07■■□□□ 1.6
CDX1-201ENST00000231656 NFASCO94856 1347 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 LGALS16A8MUM7 142 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 ARHGAP6O43182 974 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 EPHA7Q15375 998 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 MORN1Q5T089 497 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 CEP135Q66GS9 1140 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 PPFIBP1Q86W92 1011 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 PANX2Q96RD6 677 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 PANK4Q9NVE7 773 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 RGL1Q9NZL6 768 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 MAGEC2Q9UBF1 373 aaPredicted RBP25.06■■□□□ 1.6
CDX1-201ENST00000231656 MGAMO43451 1857 aa25.06■■□□□ 1.6
CDX1-201ENST00000231656 STX10O60499 249 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 VEGFBP49765 207 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 SP2Q02086 613 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 CYP4A11Q02928 519 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 ARSHQ5FYA8 562 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 ARMCX2Q7L311 632 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 MIER3Q7Z3K6 550 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 BCAS3Q9H6U6 928 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 SLITRK3O94933 977 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 GYPCP04921 128 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 PSMC6P62333 389 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 KRT76Q01546 638 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 FOXR2Q6PJQ5 311 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 CREBRFQ8IUR6 639 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 FAM114A1Q8IWE2 563 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 GLIS3Q8NEA6 775 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 ZNF507Q8TCN5 953 aa25.05■■□□□ 1.6
CDX1-201ENST00000231656 FRMD3A2A2Y4 597 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 MFAP3LO75121 409 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 CCNE2O96020 404 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 MAP2K2P36507 400 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 PTPN14Q15678 1187 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 CCDC65Q8IXS2 484 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 SYT2Q8N9I0 419 aaPredicted RBP25.04■■□□□ 1.6
CDX1-201ENST00000231656 DYDC2Q96IM9 177 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 MAML3Q96JK9 1138 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 CNOT6LQ96LI5 555 aaKnown RBP25.04■■□□□ 1.6
CDX1-201ENST00000231656 SENP7Q9BQF6 1050 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 TUFT1Q9NNX1 390 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 DNM3Q9UQ16 869 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 PCDHA2Q9Y5H9 948 aa25.04■■□□□ 1.6
CDX1-201ENST00000231656 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.04■■□□□ 1.6
CDX1-201ENST00000231656 NPHP3-ACAD11A0A0J9YXS1 232 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 TGFB3P10600 412 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 UBXN1Q04323 297 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 MAP2K5Q13163 448 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 FAM26FQ5R3K3 315 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 MAMDC4Q6UXC1 1216 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 FBXO16Q8IX29 292 aaPredicted RBP25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 169.1 ms