RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 OSBPP22059 807 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 IKQ13123 557 aaPredicted RBP12.89□□□□□ -0.35
LINC00538-201ENST00000626109 CYP4F22Q6NT55 531 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 KCTD1Q719H9 257 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 DHX40Q8IX18 779 aaKnown RBP12.89□□□□□ -0.35
LINC00538-201ENST00000626109 PLPP6Q8IY26 295 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 CLP1Q92989 425 aaKnown RBP12.89□□□□□ -0.35
LINC00538-201ENST00000626109 SERINC2Q96SA4 455 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 RPAP3Q9H6T3 665 aaPredicted RBP12.89□□□□□ -0.35
LINC00538-201ENST00000626109 VTI1BQ9UEU0 232 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 MAD2L2Q9UI95 211 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 LOC285556D6RIA3 1793 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CTIFO43310 598 aaKnown RBP12.88□□□□□ -0.35
LINC00538-201ENST00000626109 PIP5K1CO60331 668 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CMA1P23946 247 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 C1QTNF8P60827 252 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 LRMPQ12912 555 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 PABPC4Q13310 644 aaKnown RBP eCLIP12.88□□□□□ -0.35
LINC00538-201ENST00000626109 JAKMIP3Q5VZ66 844 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 PDXDC2PQ6P474 469 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CACTINQ8WUQ7 758 aaKnown RBP12.88□□□□□ -0.35
LINC00538-201ENST00000626109 TAF4BQ92750 862 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 MS4A4AQ96JQ5 239 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 TIGD1Q96MW7 591 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 LZTS2Q9BRK4 669 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CNTN3Q9P232 1028 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 AGTPBP1Q9UPW5 1226 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CLIC4Q9Y696 253 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 A0A1B0GVL5 298 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 FAM155AB1AL88 458 aaPredicted RBP12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L15C9J2P7 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L13C9JLJ4 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 TMEM232C9JQI7 657 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L11C9JVI0 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 KLRF2D3W0D1 207 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L18D6R9N7 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L22D6RA61 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L17D6RBQ6 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L19D6RCP7 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L20D6RJB6 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 KIF2AO00139 706 aaPredicted RBP12.88□□□□□ -0.35
LINC00538-201ENST00000626109 NDUFA8P51970 172 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 STAT2P52630 851 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 USP17L24Q0WX57 530 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 NOGQ13253 232 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 TRIM29Q14134 588 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 ECM1Q16610 540 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 TMTC3Q6ZXV5 915 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 FAM160B2Q86V87 743 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 STAG2Q8N3U4 1231 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CHURC1Q8WUH1 139 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 MPP4Q96JB8 637 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 CAPNS2Q96L46 248 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 HMX1Q9NP08 348 aaPredicted RBP12.88□□□□□ -0.35
LINC00538-201ENST00000626109 FEM1BQ9UK73 627 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 PTPRFP10586 1907 aa12.88□□□□□ -0.35
LINC00538-201ENST00000626109 ZNF202O95125 648 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 ECEL1O95672 775 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 KIF23Q02241 960 aaPredicted RBP12.87□□□□□ -0.35
LINC00538-201ENST00000626109 SREBF2Q12772 1141 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 TREML2Q5T2D2 321 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 TTBK2Q6IQ55 1244 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 AOPEPQ8N6M6 819 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 CCDC112Q8NEF3 446 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 BRI3BPQ8WY22 251 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 WASF1Q92558 559 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 C16orf45Q96MC5 204 aaPredicted RBP12.87□□□□□ -0.35
LINC00538-201ENST00000626109 SELENOOQ9BVL4 669 aa12.87□□□□□ -0.35
LINC00538-201ENST00000626109 CCDC85CA6NKD9 419 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PLA2G6O60733 806 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PPP6R2O75170 966 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 FLOT1O75955 427 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PLEKHA8P1O95397 391 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SKILP12757 684 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 HSPA6P17066 643 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 INHBEP58166 350 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 NLRP12P59046 1061 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 MTMR3Q13615 1198 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 MOGSQ13724 837 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SLC39A14Q15043 492 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 IQCEQ6IPM2 695 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SMAP1Q8IYB5 467 aaPredicted RBP12.86□□□□□ -0.35
LINC00538-201ENST00000626109 RGL4Q8IZJ4 473 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SLF1Q9BQI6 1058 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 ZNF700Q9H0M5 742 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 RMI1Q9H9A7 625 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 MYH15Q9Y2K3 1946 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 ESYT3A0FGR9 886 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SORBS3O60504 671 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 ICMTO60725 284 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 TUBB4AP04350 444 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PAX7P23759 505 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SMARCA1P28370 1054 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 HOXA7P31268 230 aaPredicted RBP12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SLC16A2P36021 539 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PTPN14Q15678 1187 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SYDE2Q5VT97 1194 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 CEP135Q66GS9 1140 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 GPAT2Q6NUI2 795 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms