RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 CHD1LQ86WJ1 897 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 SMARCC2Q8TAQ2 1214 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 PIBF1Q8WXW3 757 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 CLP1Q92989 425 aaKnown RBP9.01□□□□□ -0.97
CLK1-215ENST00000621181 PPP2R3CQ969Q6 453 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 CFAP54Q96N23 3096 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 IFIT3O14879 490 aaKnown RBP9.01□□□□□ -0.97
CLK1-215ENST00000621181 MBTPS2O43462 519 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 CYTH3O43739 400 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 TBX10O75333 385 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 LINC00271P0C7V0 271 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 MARK3P27448 753 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 GTF2F1P35269 517 aaKnown RBP eCLIP9.01□□□□□ -0.97
CLK1-215ENST00000621181 NDUFV1P49821 464 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 SEMA3FQ13275 785 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 SMAD4Q13485 552 aaKnown RBP9.01□□□□□ -0.97
CLK1-215ENST00000621181 GRM4Q14833 912 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 SART3Q15020 963 aaKnown RBP9.01□□□□□ -0.97
CLK1-215ENST00000621181 CUL5Q93034 780 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 SENP7Q9BQF6 1050 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 RWDD1Q9H446 243 aaPredicted RBP9.01□□□□□ -0.97
CLK1-215ENST00000621181 OSBPL3Q9H4L5 887 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 ALG13Q9NP73 1137 aaKnown RBP9.01□□□□□ -0.97
CLK1-215ENST00000621181 CD207Q9UJ71 328 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 TUBE1Q9UJT0 475 aa9.01□□□□□ -0.97
CLK1-215ENST00000621181 ATG2AQ2TAZ0 1938 aa9□□□□□ -0.97
CLK1-215ENST00000621181 TTC3P53804 2025 aa9□□□□□ -0.97
CLK1-215ENST00000621181 TECTAO75443 2155 aa9□□□□□ -0.97
CLK1-215ENST00000621181 FRMPD4Q14CM0 1322 aa9□□□□□ -0.97
CLK1-215ENST00000621181 USP34Q70CQ2 3546 aa9□□□□□ -0.97
CLK1-215ENST00000621181 STXBP3O00186 592 aa9□□□□□ -0.97
CLK1-215ENST00000621181 SEC24BO95487 1268 aa9□□□□□ -0.97
CLK1-215ENST00000621181 MMP1P03956 469 aa9□□□□□ -0.97
CLK1-215ENST00000621181 TCF7P36402 384 aaPredicted RBP9□□□□□ -0.97
CLK1-215ENST00000621181 PPFIA1Q13136 1202 aa9□□□□□ -0.97
CLK1-215ENST00000621181 LPIN1Q14693 890 aa9□□□□□ -0.97
CLK1-215ENST00000621181 SLC35G1Q2M3R5 365 aa9□□□□□ -0.97
CLK1-215ENST00000621181 HERC4Q5GLZ8 1057 aaPredicted RBP9□□□□□ -0.97
CLK1-215ENST00000621181 PCNX4Q63HM2 1172 aa9□□□□□ -0.97
CLK1-215ENST00000621181 RUFY4Q6ZNE9 571 aa9□□□□□ -0.97
CLK1-215ENST00000621181 RALYLQ86SE5 291 aaKnown RBP9□□□□□ -0.97
CLK1-215ENST00000621181 NLRX1Q86UT6 975 aa9□□□□□ -0.97
CLK1-215ENST00000621181 RNF135Q8IUD6 432 aa9□□□□□ -0.97
CLK1-215ENST00000621181 SMC5Q8IY18 1101 aa9□□□□□ -0.97
CLK1-215ENST00000621181 GIMAP8Q8ND71 665 aaPredicted RBP9□□□□□ -0.97
CLK1-215ENST00000621181 GLG1Q92896 1179 aa9□□□□□ -0.97
CLK1-215ENST00000621181 DCBLD2Q96PD2 775 aa9□□□□□ -0.97
CLK1-215ENST00000621181 PLVAPQ9BX97 442 aa9□□□□□ -0.97
CLK1-215ENST00000621181 EHMT1Q9H9B1 1298 aa9□□□□□ -0.97
CLK1-215ENST00000621181 ERAP1Q9NZ08 941 aa9□□□□□ -0.97
CLK1-215ENST00000621181 TELO2Q9Y4R8 837 aa9□□□□□ -0.97
CLK1-215ENST00000621181 ZDBF2Q9HCK1 2354 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 ENPP3O14638 875 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 WTAPQ15007 396 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 GRIK4Q16099 956 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 XRRA1Q6P2D8 792 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 USP17L6PQ6QN14 398 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 TSHZ1Q6ZSZ6 1077 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 CATIPQ7Z7H3 387 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 DNAJB3Q8WWF6 145 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 ZNF689Q96CS4 500 aaPredicted RBP8.99□□□□□ -0.97
CLK1-215ENST00000621181 RC3H2Q9HBD1 1191 aaKnown RBP8.99□□□□□ -0.97
CLK1-215ENST00000621181 BMP2KQ9NSY1 1161 aaPredicted RBP8.99□□□□□ -0.97
CLK1-215ENST00000621181 PLAGL2Q9UPG8 496 aa8.99□□□□□ -0.97
CLK1-215ENST00000621181 M0QZ92 97 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 LINC01565O15544 149 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 DGKIO75912 1065 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 IGBP1P78318 339 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 NUCB1Q02818 461 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 TROAPQ12815 778 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 FBXO47Q5MNV8 452 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 SEPT1Q8WYJ6 367 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 EDAQ92838 391 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 P2RX5Q93086 422 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 CDHR1Q96JP9 859 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 IL25Q9H293 177 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 SENP2Q9HC62 589 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 SEC63Q9UGP8 760 aaKnown RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 CDY2AQ9Y6F7 541 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 MBLAC1A4D2B0 266 aaPredicted RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 RPLP2P05387 115 aaKnown RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 ITGB1P05556 798 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 CD52P31358 61 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 MGAT3Q09327 533 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 ADAM15Q13444 863 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 MTMR1Q13613 665 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 CAMK1Q14012 370 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 NFKBIBQ15653 356 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 PAN2Q504Q3 1202 aaKnown RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 IER5Q5VY09 327 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 SUGP1Q8IWZ8 645 aaKnown RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 SMRP1Q8NCR6 262 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 NCOA7Q8NI08 942 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 CTCFLQ8NI51 663 aaPredicted RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 PBXIP1Q96AQ6 731 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 RRP36Q96EU6 259 aaKnown RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 FTHL17Q9BXU8 183 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 FAM49AQ9H0Q0 323 aaPredicted RBP8.98□□□□□ -0.97
CLK1-215ENST00000621181 SMARCAD1Q9H4L7 1026 aa8.98□□□□□ -0.97
CLK1-215ENST00000621181 AGO3Q9H9G7 860 aaKnown RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms