RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 SRGAP2O75044 1071 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 LRRC63Q05C16 580 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 ADAM9Q13443 819 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 TBC1D31Q96DN5 1066 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 ARMCX3Q9UH62 379 aaPredicted RBP11.35□□□□□ -0.59
LIG1-220ENST00000601091 PCDHA13Q9Y5I0 950 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 ANO9A1A5B4 782 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 HOXA7P31268 230 aaPredicted RBP11.35□□□□□ -0.59
LIG1-220ENST00000601091 GRAPQ13588 217 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 GPATCH4Q5T3I0 446 aaKnown RBP11.35□□□□□ -0.59
LIG1-220ENST00000601091 CDKAL1Q5VV42 579 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 CCDC121Q6ZUS5 278 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 KLHL7Q8IXQ5 586 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 GRAPLQ8TC17 118 aaPredicted RBP11.35□□□□□ -0.59
LIG1-220ENST00000601091 TACO1Q9BSH4 297 aaKnown RBP11.35□□□□□ -0.59
LIG1-220ENST00000601091 CCDC113Q9H0I3 377 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 PCDHA6Q9UN73 950 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 KIAA1024Q9UPX6 916 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 SAMM50Q9Y512 469 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 PCDHA8Q9Y5H6 950 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 COL5A2P05997 1499 aaPredicted RBP11.34□□□□□ -0.59
LIG1-220ENST00000601091 KCNQ2O43526 872 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 UNC13DQ70J99 1090 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 TRMT1LQ7Z2T5 733 aaKnown RBP11.34□□□□□ -0.59
LIG1-220ENST00000601091 ADGRA1Q86SQ6 560 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 PVALEFA0A1B0GWK0 134 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 FAM170AA1A519 330 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 RHOBTB3O94955 611 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 LIG3P49916 1009 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 VSNL1P62760 191 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 HDLBPQ00341 1268 aaKnown RBP11.34□□□□□ -0.59
LIG1-220ENST00000601091 NSUN2Q08J23 767 aaKnown RBP eCLIP11.34□□□□□ -0.59
LIG1-220ENST00000601091 ITPK1Q13572 414 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 USP6NLQ92738 828 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 MMTAG2Q9BU76 263 aaKnown RBP11.34□□□□□ -0.59
LIG1-220ENST00000601091 OSBPL10Q9BXB5 764 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 TRIM9Q9C026 710 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 COL4A3BPQ9Y5P4 624 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 MED1Q15648 1581 aaPredicted RBP11.34□□□□□ -0.59
LIG1-220ENST00000601091 RIC1Q4ADV7 1423 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 ABL1P00519 1130 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 XRCC5P13010 732 aaKnown RBP11.34□□□□□ -0.59
LIG1-220ENST00000601091 ALKBH2Q6NS38 261 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 B4GALNT4Q76KP1 1039 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 SH3GL1Q99961 368 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 IFT122Q9HBG6 1241 aa11.34□□□□□ -0.59
LIG1-220ENST00000601091 GOLGA6L7A0A1B0GV03 622 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 CFAP69A5D8W1 941 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 NDUFB5O43674 189 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 MOCS3O95396 460 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 TTLL1O95922 423 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 CXCR5P32302 372 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 POU5F1Q01860 360 aaKnown RBP11.33□□□□□ -0.6
LIG1-220ENST00000601091 C2orf54Q08AI8 447 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 SFSWAPQ12872 951 aaKnown RBP11.33□□□□□ -0.6
LIG1-220ENST00000601091 Q4G0T1 1027 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 EARS2Q5JPH6 523 aaKnown RBP11.33□□□□□ -0.6
LIG1-220ENST00000601091 ANKRD40Q6AI12 368 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 TCP11Q8WWU5 503 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 LRRC45Q96CN5 670 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 BRD8Q9H0E9 1235 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 PCDHA1Q9Y5I3 950 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 GOLGA8KD6RF30 607 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 F8VZ95 297 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 SEPT7Q16181 437 aaKnown RBP11.33□□□□□ -0.6
LIG1-220ENST00000601091 SLC5A9Q2M3M2 681 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 SLFN12Q8IYM2 578 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 CCDC155Q8N6L0 562 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 PNKPQ96T60 521 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 INTS13Q9NVM9 706 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 RNF14Q9UBS8 474 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 SERPINB13Q9UIV8 391 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 LMO7Q8WWI1 1683 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 SRGNP10124 158 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 USP14P54578 494 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 SEPT2Q15019 361 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 PEX26Q7Z412 305 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 GIMAP8Q8ND71 665 aaPredicted RBP11.33□□□□□ -0.6
LIG1-220ENST00000601091 FUT8Q9BYC5 575 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 FAM184BQ9ULE4 1060 aa11.33□□□□□ -0.6
LIG1-220ENST00000601091 GCOM1H8Y6P7 765 aaPredicted RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 BBOX1O75936 387 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 GCNT3O95395 438 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 MYZAPP0CAP1 466 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 EHHADHQ08426 723 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 TCP10Q12799 353 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 ORC2Q13416 577 aaPredicted RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 PRR16Q569H4 304 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 PEX5LQ8IYB4 626 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 GBP7Q8N8V2 638 aaPredicted RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 NEDD1Q8NHV4 660 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 FAM81AQ8TBF8 368 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 HNRNPLLQ8WVV9 542 aaKnown RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 TMEM60Q9H2L4 133 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 KCNK3O14649 394 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 ATP1A1P05023 1023 aaKnown RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 FCER1AP12319 257 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 EPHB4P54760 987 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 KCTD19Q17RG1 926 aaPredicted RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 CCSAPQ6IQ19 270 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms