RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 MFSD10Q14728 455 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 STK38Q15208 465 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 FAM47CQ5HY64 1035 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 B3GNT9Q6UX72 402 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 SH3RF1Q7Z6J0 888 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 C4orf32Q8N8J7 132 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 SPATA32Q96LK8 384 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 TEKT3Q9BXF9 490 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 TRPV6Q9H1D0 765 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 HDAC6Q9UBN7 1215 aa16.89■□□□□ 0.3
TRIM28-207ENST00000597136 CHMP2AO43633 222 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 LGR5O75473 907 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 FAAP100Q0VG06 881 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 PTGDRQ13258 359 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 ZNF746Q6NUN9 644 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-207ENST00000597136 SWSAP1Q6NVH7 229 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 CCDC60Q8IWA6 550 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-207ENST00000597136 FAM126BQ8IXS8 530 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 FAM20AQ96MK3 541 aa16.89■□□□□ 0.29
TRIM28-207ENST00000597136 TRMT13Q9NUP7 481 aaKnown RBP16.89■□□□□ 0.29
TRIM28-207ENST00000597136 RANBP2P49792 3224 aaKnown RBP16.89■□□□□ 0.29
TRIM28-207ENST00000597136 IGKV6D-21A0A0A0MT36 114 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 RBAK-RBAKDNI3L0D1 243 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 EML1O00423 815 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 SPTLC2O15270 562 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 NEMFO60524 1076 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 SUPT20HL2P0C7V6 817 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 SYN1P17600 705 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 MARK3P27448 753 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 ZNF200P98182 395 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-207ENST00000597136 ATP2C1P98194 919 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-207ENST00000597136 KRT76Q01546 638 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 CALCRLQ16602 461 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 ANKRD33Q7Z3H0 272 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 KCNG4Q8TDN1 519 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 GLG1Q92896 1179 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 MTMR9Q96QG7 549 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 VAV3Q9UKW4 847 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 ZMYND8Q9ULU4 1186 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-207ENST00000597136 MORC2Q9Y6X9 1032 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-207ENST00000597136 SIP14410 1827 aa16.88■□□□□ 0.29
TRIM28-207ENST00000597136 TBX3O15119 743 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 MARCH6O60337 910 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 B4GALT4O60513 344 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 CD4P01730 458 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 ATP4AP20648 1035 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 MARCKSP29966 332 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-207ENST00000597136 TXKP42681 527 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 STAT5BP51692 787 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 GDF6Q6KF10 455 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-207ENST00000597136 NFRKBQ6P4R8 1299 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 TMEM87AQ8NBN3 555 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 SMARCAD1Q9H4L7 1026 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 DISC1Q9NRI5 854 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 SAMM50Q9Y512 469 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 PCDHA10Q9Y5I2 948 aa16.87■□□□□ 0.29
TRIM28-207ENST00000597136 EMSYQ7Z589 1322 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 TRIM43BA6NCK2 446 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 LAD1O00515 517 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 BACH1O14867 736 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 SPIRE1Q08AE8 756 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 UGCGQ16739 394 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 CSPP1Q1MSJ5 1256 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 TRMT1LQ7Z2T5 733 aaKnown RBP16.86■□□□□ 0.29
TRIM28-207ENST00000597136 TRIM43Q96BQ3 446 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-207ENST00000597136 TOX2Q96NM4 488 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 CTAGE1Q96RT6 745 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 KATNAL1Q9BW62 490 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 MYH11P35749 1972 aa16.86■□□□□ 0.29
TRIM28-207ENST00000597136 LAMA2P24043 3122 aaKnown RBP16.86■□□□□ 0.29
TRIM28-207ENST00000597136 DCDC2CA8MYV0 355 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 PPP6R2O75170 966 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 SMIM10L2AP0DMW4 78 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 SMIM10L2BP0DMW5 78 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 ITGB8P26012 769 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 MCM4P33991 863 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 MIS18BP1Q6P0N0 1132 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 MIER3Q7Z3K6 550 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 SMAP1Q8IYB5 467 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-207ENST00000597136 C7orf31Q8N865 590 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 TTC12Q9H892 705 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-207ENST00000597136 ZNF302Q9NR11 478 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 PDLIM7Q9NR12 457 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 SETD4Q9NVD3 440 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 ERAP1Q9NZ08 941 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 GABBR1Q9UBS5 961 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 GTF2IRD1Q9UHL9 959 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 PCDHA12Q9UN75 941 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 TANC1Q9C0D5 1861 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 TRIOBPQ9H2D6 2365 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 WDR64B1ANS9 1081 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 H0YGN5 161 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 GOLGA6L22H0YM25 854 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 ZNF862O60290 1169 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 PRPF40AO75400 957 aaKnown RBP16.85■□□□□ 0.29
TRIM28-207ENST00000597136 PSAPP07602 524 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 OR52Z1P0C646 297 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 CYP2C9P11712 490 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 PRPHP41219 470 aa16.85■□□□□ 0.29
TRIM28-207ENST00000597136 ME1P48163 572 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms