RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 UBAP1LF5GYI3 381 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 PALMO75781 387 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 AFPP02771 609 aaKnown RBP14.82□□□□□ -0.04
SHMT2-222ENST00000555774 GBP6Q6ZN66 633 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 HDAC7Q8WUI4 952 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 NRXN2Q9P2S2 1712 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 ARMCX3Q9UH62 379 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-222ENST00000555774 ANKRD31Q8N7Z5 1873 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 POTEFA5A3E0 1075 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 SPDYE3A6NKU9 549 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 SHOX2O60902 331 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-222ENST00000555774 POTEIP0CG38 1075 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 ERCC3P19447 782 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 STAT3P40763 770 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 APBA1Q02410 837 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 PPFIA1Q13136 1202 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 DOK7Q18PE1 504 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 POTEGQ6S5H5 508 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 POTEEQ6S8J3 1075 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 TRIM34Q9BYJ4 488 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 GDF3Q9NR23 364 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 RBM12Q9NTZ6 932 aaKnown RBP14.82□□□□□ -0.04
SHMT2-222ENST00000555774 SYNPO2Q9UMS6 1093 aa14.82□□□□□ -0.04
SHMT2-222ENST00000555774 GOLGA6CA6NDK9 693 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 GOLGA6DP0CG33 693 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 RPL13P26373 211 aaKnown RBP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 KLRC1P26715 233 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 CXCR5P32302 372 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 CACNB1Q02641 598 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 ICA1Q05084 483 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 PRR16Q569H4 304 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 LRRC31Q6UY01 552 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 SRLQ86TD4 932 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 FBXO11Q86XK2 927 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 LENG9Q96B70 501 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 POLR3CQ9BUI4 534 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 TYW1Q9NV66 732 aaKnown RBP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 GOLGA6AQ9NYA3 693 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 SIPA1L1O43166 1804 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 ADAMTSL1Q8N6G6 1762 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 A0A087X0T9 212 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 FAM228BP0C875 321 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 SPATA31C1P0DKV0 1188 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 PDE6BP35913 854 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 PRKCIP41743 596 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 MATR3P43243 847 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 IRX5P78411 483 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 KIAA0753Q2KHM9 967 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 DPY19L2P1Q6NXN4 242 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 FAM133AQ8N9E0 248 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 GDAP1L1Q96MZ0 367 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 REEP2Q9BRK0 252 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHMT2-222ENST00000555774 ZHX3Q9H4I2 956 aa14.81□□□□□ -0.04
SHMT2-222ENST00000555774 A6NNZ2 444 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 HSF2BPO75031 334 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 PPFIA4O75335 1185 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 CYP3A4P08684 503 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 GAP43P17677 238 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 TRAF1Q13077 416 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 PAK2Q13177 524 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 TUBB8Q3ZCM7 444 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 SYDE2Q5VT97 1194 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 BTNL9Q6UXG8 535 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 SFR1Q86XK3 245 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 ZFPM1Q8IX07 1006 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 NLGN1Q8N2Q7 840 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 PSMB7Q99436 277 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 KIF13BQ9NQT8 1826 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 GTPBP10A4D1E9 387 aaKnown RBP14.8□□□□□ -0.04
SHMT2-222ENST00000555774 XRCC5P13010 732 aaKnown RBP14.8□□□□□ -0.04
SHMT2-222ENST00000555774 SLC20A2Q08357 652 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 NFIL3Q16649 462 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 EXOC3L4Q17RC7 722 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 STRIP1Q5VSL9 837 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 SIAH1Q8IUQ4 282 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 MREGQ8N565 214 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 EIF1ADQ8N9N8 165 aaKnown RBP14.8□□□□□ -0.04
SHMT2-222ENST00000555774 RIN2Q8WYP3 895 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-222ENST00000555774 INPP4AQ96PE3 977 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-222ENST00000555774 RUFY1Q96T51 708 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 EHD2Q9NZN4 543 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 ADAMTS1Q9UHI8 967 aa14.8□□□□□ -0.04
SHMT2-222ENST00000555774 TRPC5Q9UL62 973 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-222ENST00000555774 F5H6K3 240 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 PIK3CDO00329 1044 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 TBCAO75347 108 aaKnown RBP14.79□□□□□ -0.04
SHMT2-222ENST00000555774 EYA4O95677 639 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 UCHL3P15374 230 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 CASP5P51878 434 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 TNNC1P63316 161 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 SLC7A5Q01650 507 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 KLRC3Q07444 240 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 PABPC4Q13310 644 aaKnown RBP eCLIP14.79□□□□□ -0.048e-7■■■■■ 32.8
SHMT2-222ENST00000555774 IRF2BP2Q7Z5L9 587 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 GPIHBP1Q8IV16 184 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 TAF4BQ92750 862 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 MASTLQ96GX5 879 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 PBKQ96KB5 322 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms