RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 SH2D4AQ9H788 454 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 VCPKMTQ9H867 229 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 GCOM1H8Y6P7 765 aaPredicted RBP20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 CETN3O15182 167 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 USO1O60763 962 aaKnown RBP20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 PRPF6O94906 941 aaKnown RBP20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 EYA4O95677 639 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 POLR2MP0CAP2 368 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 KCNA3P22001 575 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 UBXN2AP68543 259 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 ARHGAP27Q6ZUM4 889 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 DEFB132Q7Z7B7 95 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 HNRNPLLQ8WVV9 542 aaKnown RBP20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 HSD17B14Q9BPX1 270 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 GLIS2Q9BZE0 524 aaPredicted RBP20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 MLXIPQ9HAP2 919 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 TRAF3IP3Q9Y228 551 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 RABGAP1Q9Y3P9 1069 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 CAPN6Q9Y6Q1 641 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 ANO9A1A5B4 782 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 TLR2O60603 784 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 PSMD10O75832 226 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 POLR2FP61218 127 aaKnown RBP20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 GFPT1Q06210 699 aaPredicted RBP20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 TRAF1Q13077 416 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 MAPK8IP2Q13387 824 aaPredicted RBP20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 CTTNQ14247 550 aaKnown RBP20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 BEND6Q5SZJ8 279 aaPredicted RBP20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 CHURC1Q8WUH1 139 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 UPF1Q92900 1129 aaKnown RBP eCLIP20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 CAPZA3Q96KX2 299 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 UBXN6Q9BZV1 441 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 FAM184BQ9ULE4 1060 aa20.43■□□□□ 0.86
PRPF40B-208ENST00000548436 TBC1D12O60347 775 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 POLD1P28340 1107 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 VSNL1P62760 191 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 KCNH2Q12809 1159 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 TERF2Q15554 542 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 PIGOQ8TEQ8 1089 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 ZFP91Q96JP5 570 aaPredicted RBP20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 FBXO28Q9NVF7 368 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 SSU72P8A0A1W2PR75 194 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 ZNF185O15231 689 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 SLITRK3O94933 977 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 DPEP1P16444 411 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 CAP2P40123 477 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 LRCH2Q5VUJ6 765 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 RINT1Q6NUQ1 792 aa20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 SAMD1Q6SPF0 538 aaPredicted RBP20.42■□□□□ 0.86
PRPF40B-208ENST00000548436 CHMP2AO43633 222 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 MOCS3O95396 460 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 MAGEA1P43355 309 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 SFMBT2Q5VUG0 894 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 FKBP1CQ5VVH2 108 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 TEX2Q8IWB9 1127 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 TRIM58Q8NG06 486 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 SYN2Q92777 582 aaPredicted RBP20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 SLC5A5Q92911 643 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 DYDC2Q96IM9 177 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 ABCB6Q9NP58 842 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 PGAP2Q9UHJ9 254 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 SALL4Q9UJQ4 1053 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 ZBTB39O15060 712 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 PLA2G6O60733 806 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 PPP2R5CQ13362 524 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 BMT2Q1RMZ1 405 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 TDRD12Q587J7 1177 aaKnown RBP20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 TPH2Q8IWU9 490 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 NUCKS1Q9H1E3 243 aaKnown RBP20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 TUFT1Q9NNX1 390 aa20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 MRPL11Q9Y3B7 192 aaKnown RBP20.41■□□□□ 0.86
PRPF40B-208ENST00000548436 MYH11P35749 1972 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 SFI1A8K8P3 1242 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 PDE2AO00408 941 aaPredicted RBP20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 PDXKO00764 312 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 MAP2K7O14733 419 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 PJA2O43164 708 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 TACC1O75410 805 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 KCNA1Q09470 495 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 FRMD5Q7Z6J6 570 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 MTMR14Q8NCE2 650 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 GANQ9H2C0 597 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 JADE2Q9NQC1 790 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 JRKLQ9Y4A0 524 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 ASTN1O14525 1302 aa20.4■□□□□ 0.86
PRPF40B-208ENST00000548436 RBAK-RBAKDNI3L0D1 243 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 TBCAO75347 108 aaKnown RBP20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 GCNT3O95395 438 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 SERPING1P05155 500 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 SLC9C1Q4G0N8 1177 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 CEP55Q53EZ4 464 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 FAM83AQ86UY5 434 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 FAM160B2Q86V87 743 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 LDHDQ86WU2 507 aa20.39■□□□□ 0.86
PRPF40B-208ENST00000548436 CALUO43852 315 aaPredicted RBP20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 ARP10275 920 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 EPS15P42566 896 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 USP14P54578 494 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 RASSF7Q02833 373 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 DPY19L2P1Q6NXN4 242 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms