RNA–Protein interactions for RNA: ENST00000539934.5

DDX55-206, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 2,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-206ENST00000539934 ARPP21Q9UBL0 812 aaPredicted RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 DYTNA2CJ06 578 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 SLC3A2P08195 630 aaKnown RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 PCP11498 1178 aaKnown RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 USP5P45974 858 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 DMPKQ09013 629 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 GRIK5Q16478 980 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 NBPF12Q5TAG4 269 aaPredicted RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 STRIP1Q5VSL9 837 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 SYCP3Q8IZU3 236 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 DCLK2Q8N568 766 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 ZBTB8BQ8NAP8 495 aaPredicted RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 FRS2Q8WU20 508 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 LRRC45Q96CN5 670 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 WNK4Q96J92 1243 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 C16orf45Q96MC5 204 aaPredicted RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 TCHPQ9BT92 498 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 OXCT2Q9BYC2 517 aaPredicted RBP13.82□□□□□ -0.2
DDX55-206ENST00000539934 KIAA1468Q9P260 1216 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 PCSK1NQ9UHG2 260 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 IP6K2Q9UHH9 426 aa13.82□□□□□ -0.2
DDX55-206ENST00000539934 MANSC4A6NHS7 340 aaPredicted RBP13.81□□□□□ -0.2
DDX55-206ENST00000539934 RANBP6O60518 1105 aaKnown RBP13.81□□□□□ -0.2
DDX55-206ENST00000539934 PRDM1O75626 825 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 ALDH1A1P00352 501 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 PARP1P09874 1014 aaKnown RBP13.81□□□□□ -0.2
DDX55-206ENST00000539934 BCRP11274 1271 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 CCNCP24863 283 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 CDC27P30260 824 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 ITIH3Q06033 890 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 CCDC38Q502W7 563 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 CCSAPQ6IQ19 270 aaPredicted RBP13.81□□□□□ -0.2
DDX55-206ENST00000539934 SLC15A3Q8IY34 581 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 CEP112Q8N8E3 955 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 TEKT4Q8WW24 435 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 CFHR5Q9BXR6 569 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 ZCCHC17Q9NP64 241 aaKnown RBP13.81□□□□□ -0.2
DDX55-206ENST00000539934 SSC5DA1L4H1 1573 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 ECM29Q5VYK3 1845 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 TNKSO95271 1327 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 NAV1Q8NEY1 1877 aa13.81□□□□□ -0.2
DDX55-206ENST00000539934 H0YGN5 161 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 P4HA2O15460 535 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 SMNDC1O75940 238 aaKnown RBP eCLIP13.8□□□□□ -0.2
DDX55-206ENST00000539934 FSBPO95073 299 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 PENKP01210 267 aaPredicted RBP13.8□□□□□ -0.2
DDX55-206ENST00000539934 DYNC1I2Q13409 638 aaKnown RBP13.8□□□□□ -0.2
DDX55-206ENST00000539934 ENOX2Q16206 610 aaKnown RBP13.8□□□□□ -0.2
DDX55-206ENST00000539934 MFSD14BQ5SR56 506 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.8□□□□□ -0.2
DDX55-206ENST00000539934 TRIM58Q8NG06 486 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 PPP2R3CQ969Q6 453 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 PPP1R14BQ96C90 147 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 RABEP2Q9H5N1 569 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 SLC39A2Q9NP94 309 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 MCM9Q9NXL9 1143 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 BZW2Q9Y6E2 419 aaKnown RBP13.8□□□□□ -0.2
DDX55-206ENST00000539934 MROH7-TTC4A0A0A0MT08 1334 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 GOLGA6L4A6NEF3 574 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 ZBED4O75132 1171 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 OXCT1P55809 520 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 COX10Q12887 443 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 SLMAPQ14BN4 828 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 NCCRP1Q6ZVX7 275 aaPredicted RBP13.8□□□□□ -0.2
DDX55-206ENST00000539934 APOBEC3FQ8IUX4 373 aaKnown RBP13.8□□□□□ -0.2
DDX55-206ENST00000539934 CDAN1Q8IWY9 1227 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 TTC39CQ8N584 583 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 CERS5Q8N5B7 392 aa13.8□□□□□ -0.2
DDX55-206ENST00000539934 LSM1O15116 133 aaKnown RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 TTI1O43156 1089 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 SP3Q02447 781 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 DLGAP5Q15398 846 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 LONRF1Q17RB8 773 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 SBK1Q52WX2 424 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 OTUD7BQ6GQQ9 843 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 SH3RF3Q8TEJ3 882 aaPredicted RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 PHKBQ93100 1093 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 TMEM106CQ9BVX2 250 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 AS3MTQ9HBK9 375 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 PTCH2Q9Y6C5 1203 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 CDK5RAP2Q96SN8 1893 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 ZNF646O15015 1829 aaPredicted RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 PPP1R12BO60237 982 aaPredicted RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 TBC1D12O60347 775 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 FGRP09769 529 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 FNTAP49354 379 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 SUZ12Q15022 739 aaKnown RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 RASA2Q15283 850 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 RTN1Q16799 776 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 CCDC122Q5T0U0 273 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 CCDC183Q5T5S1 534 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 CCDC174Q6PII3 467 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 CHRDL2Q6WN34 429 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 BPHLQ86WA6 291 aaPredicted RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 LEO1Q8WVC0 666 aaPredicted RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 RNPC3Q96LT9 517 aaKnown RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 ZSCAN10Q96SZ4 725 aaPredicted RBP13.79□□□□□ -0.2
DDX55-206ENST00000539934 COA1Q9GZY4 146 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 ELP3Q9H9T3 547 aa13.79□□□□□ -0.2
DDX55-206ENST00000539934 DKK3Q9UBP4 350 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms