RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 LRRC37A2A6NM11 1700 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 KIAA1217Q5T5P2 1943 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 ZNFX1Q9P2E3 1918 aaKnown RBP29.9■■■□□ 2.38
MSX1-201ENST00000382723 CA12O43570 354 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 RHOBTB3O94955 611 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 KRT18P05783 430 aaKnown RBP29.9■■■□□ 2.38
MSX1-201ENST00000382723 ACTR2P61160 394 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 UGCGQ16739 394 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 SMAP1Q8IYB5 467 aaPredicted RBP29.9■■■□□ 2.38
MSX1-201ENST00000382723 RDM1Q8NG50 284 aa29.9■■■□□ 2.38
MSX1-201ENST00000382723 TGFB3P10600 412 aa29.89■■■□□ 2.38
MSX1-201ENST00000382723 CD44P16070 742 aaKnown RBP29.89■■■□□ 2.38
MSX1-201ENST00000382723 CACNB1Q02641 598 aaPredicted RBP29.89■■■□□ 2.38
MSX1-201ENST00000382723 ARSHQ5FYA8 562 aa29.89■■■□□ 2.38
MSX1-201ENST00000382723 UNC13DQ70J99 1090 aa29.89■■■□□ 2.38
MSX1-201ENST00000382723 DNAJC19Q96DA6 116 aa29.89■■■□□ 2.38
MSX1-201ENST00000382723 ARIH2O95376 493 aa29.88■■■□□ 2.37
MSX1-201ENST00000382723 PLCB2Q00722 1185 aa29.88■■■□□ 2.37
MSX1-201ENST00000382723 KLHL10Q6JEL2 608 aa29.88■■■□□ 2.37
MSX1-201ENST00000382723 CNNM4Q6P4Q7 775 aa29.88■■■□□ 2.37
MSX1-201ENST00000382723 TRMT1LQ7Z2T5 733 aaKnown RBP29.88■■■□□ 2.37
MSX1-201ENST00000382723 ZNF467Q7Z7K2 595 aaPredicted RBP29.88■■■□□ 2.37
MSX1-201ENST00000382723 GIMAP8Q8ND71 665 aaPredicted RBP29.88■■■□□ 2.37
MSX1-201ENST00000382723 MAML3Q96JK9 1138 aa29.88■■■□□ 2.37
MSX1-201ENST00000382723 PDGFCQ9NRA1 345 aa29.88■■■□□ 2.37
MSX1-201ENST00000382723 PVALEFA0A1B0GWK0 134 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 GGPS1O95749 300 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 PSAPP07602 524 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 PSMC5P62195 406 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 NEDD9Q14511 834 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 NPLOC4Q8TAT6 608 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 HPS3Q969F9 1004 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 RUSC1Q9BVN2 902 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 GABBR1Q9UBS5 961 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 DDX41Q9UJV9 622 aaKnown RBP29.87■■■□□ 2.37
MSX1-201ENST00000382723 MAPK8IP1Q9UQF2 711 aa29.87■■■□□ 2.37
MSX1-201ENST00000382723 PPP1R3GB7ZBB8 358 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 MORN1Q5T089 497 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 SWSAP1Q6NVH7 229 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 KCNV1Q6PIU1 500 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 ANP32BQ92688 251 aaKnown RBP29.86■■■□□ 2.37
MSX1-201ENST00000382723 FARP2O94887 1054 aaPredicted RBP29.86■■■□□ 2.37
MSX1-201ENST00000382723 ALDH1A1P00352 501 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 MIS18BP1Q6P0N0 1132 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 ABHD15Q6UXT9 468 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 PANK4Q9NVE7 773 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.86■■■□□ 2.37
MSX1-201ENST00000382723 SLC5A4Q9NY91 659 aa29.86■■■□□ 2.37
MSX1-201ENST00000382723 DIS3Q9Y2L1 958 aaKnown RBP29.86■■■□□ 2.37
MSX1-201ENST00000382723 TRMT44Q8IYL2 757 aaKnown RBP29.85■■■□□ 2.37
MSX1-201ENST00000382723 MLXIPQ9HAP2 919 aa29.85■■■□□ 2.37
MSX1-201ENST00000382723 SMTNL1A8MU46 457 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 MAP2K5Q13163 448 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 RINT1Q6NUQ1 792 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 ZHX3Q9H4I2 956 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 ARHGEF35A5YM69 484 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 BACH1O14867 736 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 LYPLA2O95372 231 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 TXNP10599 105 aaKnown RBP29.84■■■□□ 2.37
MSX1-201ENST00000382723 YWHABP31946 246 aaKnown RBP29.84■■■□□ 2.37
MSX1-201ENST00000382723 PRCPP42785 496 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 MYL5Q02045 173 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 STK4Q13043 487 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 GIT2Q14161 759 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 TMEM63BQ5T3F8 832 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 MAMDC4Q6UXC1 1216 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 CCDC60Q8IWA6 550 aaPredicted RBP29.84■■■□□ 2.37
MSX1-201ENST00000382723 C4orf19Q8IY42 314 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 REEP2Q9BRK0 252 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 DOCK5Q9H7D0 1870 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 SLC39A2Q9NP94 309 aa29.84■■■□□ 2.37
MSX1-201ENST00000382723 SUPT20HL2P0C7V6 817 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 STX17P56962 302 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 COASYQ13057 564 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 TTLL4Q14679 1199 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 NCAPHQ15003 741 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 CCDC62Q6P9F0 684 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 CCDC65Q8IXS2 484 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 SCFD2Q8WU76 684 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 TINF2Q9BSI4 451 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 POLD4Q9HCU8 107 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 CTNND2Q9UQB3 1225 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 PLXNA1Q9UIW2 1896 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 SYNGAP1Q96PV0 1343 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 TMEM150BA6NC51 233 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 TNPO2O14787 897 aaKnown RBP29.83■■■□□ 2.37
MSX1-201ENST00000382723 IKBKBO14920 756 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 SNAI1O95863 264 aaPredicted RBP29.83■■■□□ 2.37
MSX1-201ENST00000382723 ERCC5P28715 1186 aaPredicted RBP29.83■■■□□ 2.37
MSX1-201ENST00000382723 METTL7BQ6UX53 244 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 ATP6V0A1Q93050 837 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 VTA1Q9NP79 307 aa29.83■■■□□ 2.37
MSX1-201ENST00000382723 UTP14CQ5TAP6 766 aaKnown RBP29.82■■■□□ 2.36
MSX1-201ENST00000382723 TAPT1Q6NXT6 567 aa29.82■■■□□ 2.36
MSX1-201ENST00000382723 COPS5Q92905 334 aa29.82■■■□□ 2.36
MSX1-201ENST00000382723 MED15Q96RN5 788 aa29.82■■■□□ 2.36
MSX1-201ENST00000382723 SH2D3AQ9BRG2 576 aa29.82■■■□□ 2.36
MSX1-201ENST00000382723 AP5Z1O43299 807 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 CT47A1Q5JQC4 288 aaPredicted RBP29.81■■■□□ 2.36
MSX1-201ENST00000382723 CELF3Q5SZQ8 465 aaKnown RBP29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms