RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 OTULINQ96BN8 352 aa6.61□□□□□ -1.35
VCAN-203ENST00000343200 SNX25Q9H3E2 840 aa6.61□□□□□ -1.35
VCAN-203ENST00000343200 EPN1Q9Y6I3 576 aaPredicted RBP6.61□□□□□ -1.35
VCAN-203ENST00000343200 CFLARO15519 480 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 KRT16P08779 473 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 EHHADHQ08426 723 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PRPSAP1Q14558 356 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 HIF1AQ16665 826 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 FAM81AQ8TBF8 368 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 SKA2Q8WVK7 121 aaPredicted RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 BTBD6Q96KE9 485 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CCDC134Q9H6E4 229 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 KDM5DQ9BY66 1539 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 KDM3AQ9Y4C1 1321 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PRR23AA6NEV1 266 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 ACSL3O95573 720 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 AKAP5P24588 427 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CASP14P31944 242 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 HAND2P61296 217 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 UBE3AQ05086 875 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 TRIP4Q15650 581 aaPredicted RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 IL17RAQ96F46 866 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 RBM8AQ9Y5S9 174 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 A0A0B4J269 797 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 RASA4BC9J798 803 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PIK3R2O00459 728 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 RASA4O43374 803 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CCDC22O60826 627 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 GNAT1P11488 350 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CYP2C19P33261 490 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PDAP1Q13442 181 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 TUBB3Q13509 450 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CENPUQ71F23 418 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 AGGF1Q8N302 714 aaeCLIP6.6□□□□□ -1.35
VCAN-203ENST00000343200 SEPT1Q8WYJ6 367 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 B3GALT6Q96L58 329 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 NLRP2Q9NX02 1062 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CABP4P57796 275 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 NLRP11P59045 1033 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 CAPRIN1Q14444 709 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 TRMT44Q8IYL2 757 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 STAG2Q8N3U4 1231 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 DEPDC7Q96QD5 511 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 VIPAS39Q9H9C1 493 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PARVAQ9NVD7 372 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 AOX1Q06278 1338 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CFTRP13569 1480 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 QRICH2Q9H0J4 1663 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PDS5BQ9NTI5 1447 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 KCNA1Q09470 495 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CSTF3Q12996 717 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 ZCWPW2Q504Y3 356 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 TRIM69Q86WT6 500 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 ABTB2Q8N961 1025 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 HIPK4Q8NE63 616 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 TEKT4Q8WW24 435 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 FAM161BQ96MY7 647 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 SFMBT1Q9UHJ3 866 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 ATPIF1Q9UII2 106 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 RABGEF1Q9UJ41 708 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PGM3O95394 542 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 C2orf54Q08AI8 447 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PLEKHA7Q6IQ23 1121 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 DHX32Q7L7V1 743 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 STKLD1Q8NE28 680 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 ADA2Q9NZK5 511 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 SNPHO15079 494 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 TRIM24O15164 1050 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 EIF3HO15372 352 aaKnown RBP eCLIP6.6□□□□□ -1.35
VCAN-203ENST00000343200 IL6P05231 212 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 GNL1P36915 607 aaPredicted RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 NUTM2GQ5VZR2 741 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CALML6Q8TD86 181 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 DEPDC1BQ8WUY9 529 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 CHAMP1Q96JM3 812 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PANX2Q96RD6 677 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 GOLGA8JA6NMD2 632 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PECAM1P16284 738 aaPredicted RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 CA4P22748 312 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 ATXN3P54252 364 aaPredicted RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 KRT17Q04695 432 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PPIDQ08752 370 aaKnown RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 AASDHQ4L235 1098 aaPredicted RBP6.6□□□□□ -1.35
VCAN-203ENST00000343200 SGO2Q562F6 1265 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 PHACTR3Q96KR7 559 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 TSPAN18Q96SJ8 248 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 MAGEF1Q9HAY2 307 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 KRT84Q9NSB2 600 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 SPTLC3Q9NUV7 552 aa6.6□□□□□ -1.35
VCAN-203ENST00000343200 ARFGEF3Q5TH69 2177 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 TRIM66O15016 1216 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 SERPINB8P50452 374 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 PDE1AP54750 535 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 ARPC4P59998 168 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 ATP8B2P98198 1209 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 PPP4R4Q6NUP7 873 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 PPP1R2P3Q6NXS1 205 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 MDM1Q8TC05 714 aa6.59□□□□□ -1.35
VCAN-203ENST00000343200 SNRNP27Q8WVK2 155 aaKnown RBP6.59□□□□□ -1.35
VCAN-203ENST00000343200 ATP6V1G3Q96LB4 118 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms