RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 GDF3Q9NR23 364 aa16.75■□□□□ 0.27
DDX56-201ENST00000258772 GRID2IPA4D2P6 1211 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 GOLGA8KD6RF30 607 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 GLI1P08151 1106 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 EEF2P13639 858 aaKnown RBP16.74■□□□□ 0.27
DDX56-201ENST00000258772 SLC20A2Q08357 652 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 DOK7Q18PE1 504 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 DPY19L2P1Q6NXN4 242 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 ETNPPLQ8TBG4 499 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 HDAC9Q9UKV0 1011 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 TRAF3IP3Q9Y228 551 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 ADAMTSL1Q8N6G6 1762 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 DNA2P51530 1060 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 ARHGAP4P98171 946 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 PPFIA1Q13136 1202 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 AP3B2Q13367 1082 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 NNTQ13423 1086 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 SLFN13Q68D06 897 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 IRF2BP2Q7Z5L9 587 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 FRMD5Q7Z6J6 570 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 DCAF4Q8WV16 495 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 P2RX7Q99572 595 aaKnown RBP16.74■□□□□ 0.27
DDX56-201ENST00000258772 RASSF4Q9H2L5 321 aa16.74■□□□□ 0.27
DDX56-201ENST00000258772 HSF2BPO75031 334 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 SPATA31C1P0DKV0 1188 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 EPB41P11171 864 aaKnown RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 ACTN1P12814 892 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 SLC9A1P19634 815 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 KNOP1Q1ED39 458 aaKnown RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 PRR16Q569H4 304 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 SYT2Q8N9I0 419 aaPredicted RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 ERMNQ8TAM6 284 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 PLEKHA4Q9H4M7 779 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 PLCB1Q9NQ66 1216 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 NYAP2Q9P242 653 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 PACSIN2Q9UNF0 486 aaPredicted RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 DNM3Q9UQ16 869 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 TBX3O15119 743 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 HEXIM1O94992 359 aaKnown RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 RPA1P27694 616 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 HOXD13P35453 343 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 CARSP49589 748 aaKnown RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 IRAK1P51617 712 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 PTK2Q05397 1052 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 PABPC4Q13310 644 aaKnown RBP eCLIP16.73■□□□□ 0.272e-6■■□□□ 12.6
DDX56-201ENST00000258772 SHROOM1Q2M3G4 852 aaPredicted RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 INPP4AQ96PE3 977 aaPredicted RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 EPB41L5Q9HCM4 733 aa16.73■□□□□ 0.27
DDX56-201ENST00000258772 ARMCX3Q9UH62 379 aaPredicted RBP16.73■□□□□ 0.27
DDX56-201ENST00000258772 FAM196BA6NMK8 535 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 BTNL10A8MVZ5 291 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 MEIS1O00470 390 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 GUCY2DQ02846 1103 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 Q4G0T1 1027 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 C10orf76Q5T2E6 689 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 EPM2AIP1Q7L775 607 aaPredicted RBP16.72■□□□□ 0.27
DDX56-201ENST00000258772 SFR1Q86XK3 245 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 REEP2Q9BRK0 252 aa16.72■□□□□ 0.27
DDX56-201ENST00000258772 AFPP02771 609 aaKnown RBP16.71■□□□□ 0.27
DDX56-201ENST00000258772 UCHL3P15374 230 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 CERKLQ49MI3 558 aaPredicted RBP16.71■□□□□ 0.27
DDX56-201ENST00000258772 ZNF571Q7Z3V5 609 aaPredicted RBP16.71■□□□□ 0.27
DDX56-201ENST00000258772 LENG9Q96B70 501 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 ARL8AQ96BM9 186 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 GJD4Q96KN9 370 aaPredicted RBP16.71■□□□□ 0.27
DDX56-201ENST00000258772 SPAG5Q96R06 1193 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 RUFY1Q96T51 708 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 CAPS2Q9BXY5 557 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 NFU1Q9UMS0 254 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 BZW2Q9Y6E2 419 aaKnown RBP16.71■□□□□ 0.27
DDX56-201ENST00000258772 ZSCAN5CA6NGD5 496 aaPredicted RBP16.71■□□□□ 0.27
DDX56-201ENST00000258772 PDXKO00764 312 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 PON1P27169 355 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 CRKP46108 304 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 EXOC3L4Q17RC7 722 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 GBP6Q6ZN66 633 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 SIAH1Q8IUQ4 282 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 IFT81Q8WYA0 676 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 ZIM3Q96PE6 472 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 KRT12Q99456 494 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 AMNQ9BXJ7 453 aa16.71■□□□□ 0.27
DDX56-201ENST00000258772 KIF13BQ9NQT8 1826 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 ESYT3A0FGR9 886 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 FAM86B1E9PN63 330 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 CALUO43852 315 aaPredicted RBP16.7■□□□□ 0.26
DDX56-201ENST00000258772 FAM86B2P0C5J1 330 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 FAM153BP0C7A2 387 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 RNASE9P60153 205 aaKnown RBP16.7■□□□□ 0.26
DDX56-201ENST00000258772 TCP10Q12799 353 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 PAK2Q13177 524 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 FAM153CQ494X1 144 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 TTMPQ5BVD1 217 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 MCTP2Q6DN12 878 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 IQCKQ8N0W5 287 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 FAM153AQ9UHL3 310 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 SIPA1L1O43166 1804 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 DDTLA6NHG4 134 aaPredicted RBP16.7■□□□□ 0.26
DDX56-201ENST00000258772 AKAP3O75969 853 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 MYBP10242 640 aa16.7■□□□□ 0.26
DDX56-201ENST00000258772 XRCC5P13010 732 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms