RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 DDAH1O94760 285 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SERPING1P05155 500 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 HNRNPH3P31942 346 aaKnown RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 PPP2R5BQ15173 497 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 FIGNQ5HY92 759 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 THEMIS2Q5TEJ8 643 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 CENPPQ6IPU0 288 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 GJB7Q6PEY0 223 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 CCDC24Q8N4L8 307 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 RNF10Q8N5U6 811 aaKnown RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 DDX12PQ92771 950 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 PAGR1Q9BTK6 254 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SAMD15Q9P1V8 674 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 TSKSQ9UJT2 592 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.68■□□□□ 0.1
SDC1-201ENST00000254351 LAMB4A4D0S4 1761 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 MYH7P12883 1935 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 PJA2O43164 708 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 UBOX5O94941 541 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 KRT13P13646 458 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SLC9A1P19634 815 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 AMPD3Q01432 767 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SNX1Q13596 522 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 ASIC2Q16515 512 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SLC18A3Q16572 532 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SLC35G1Q2M3R5 365 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 DCAF17Q5H9S7 520 aaPredicted RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 BZW1Q7L1Q6 419 aaKnown RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 TMC3Q7Z5M5 1100 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 TBCKQ8TEA7 893 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 ZNF526Q8TF50 670 aaPredicted RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 PLA2G12BQ9BX93 195 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 UBA5Q9GZZ9 404 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 ARHGEF10LQ9HCE6 1279 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 DNAJC17Q9NVM6 304 aaKnown RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 BCS1LQ9Y276 419 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 SPEF2Q9C093 1822 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 RTN2O75298 545 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 KIF5BP33176 963 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 IGHMBP2P38935 993 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 DRP2Q13474 957 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 SUSD4Q5VX71 490 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 ANKRD42Q8N9B4 389 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 MMTAG2Q9BU76 263 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 CCSER1Q9C0I3 900 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 LUC7LQ9NQ29 371 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 RTCBQ9Y3I0 505 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 NID2Q14112 1375 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 F8VZ95 297 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 PGRMC1O00264 195 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 PPIP5K2O43314 1243 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 LGR5O75473 907 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 LCA5LO95447 670 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 FGFR4P22455 802 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 KLRK1P26718 216 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 RNASELQ05823 741 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 ERICH1Q86X53 443 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 GDAP1Q8TB36 358 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 PIGBQ92521 554 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 INTS9Q9NV88 658 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 ARPP21Q9UBL0 812 aaPredicted RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 PNMA3Q9UL41 463 aa15.67■□□□□ 0.1
SDC1-201ENST00000254351 UTP11Q9Y3A2 253 aaKnown RBP15.67■□□□□ 0.1
SDC1-201ENST00000254351 SMCO2A6NFE2 343 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 IGF2BP3O00425 579 aaKnown RBP eCLIP15.66■□□□□ 0.12e-7■■■□□ 14.9
SDC1-201ENST00000254351 EPS8L3Q8TE67 593 aaKnown RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 ZNF384Q8TF68 577 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 RUBCNQ92622 972 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 ZNF570Q96NI8 536 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 MKNK2Q9HBH9 465 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 OSGEPQ9NPF4 335 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 ALDH5A1P51649 535 aaPredicted RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 BIRC3Q13489 604 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 ZNF571Q7Z3V5 609 aaPredicted RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 SNX29Q8TEQ0 813 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 LARP4BQ92615 738 aaKnown RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 FMO2Q99518 471 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 TSG101Q99816 390 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.66■□□□□ 0.1
SDC1-201ENST00000254351 SAP30BPQ9UHR5 308 aaKnown RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 DDX60Q8IY21 1712 aaKnown RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 PRDX5P30044 214 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 TRIM28Q13263 835 aaKnown RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 CAPRIN2Q6IMN6 1127 aaKnown RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 RCSD1Q6JBY9 416 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 USP17L2Q6R6M4 530 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 LRRC55Q6ZSA7 311 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 SPDYE1Q8NFV5 336 aaPredicted RBP15.66■□□□□ 0.1
SDC1-201ENST00000254351 ZCWPW1Q9H0M4 648 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 TRPC6Q9Y210 931 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 C15orf41Q9Y2V0 281 aa15.66■□□□□ 0.1
SDC1-201ENST00000254351 TNS2Q63HR2 1409 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 TMEM110-MUSTN1A8MSY1 372 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 EVI5O60447 810 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 TDP2O95551 362 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 MAP2K1Q02750 393 aaPredicted RBP15.65■□□□□ 0.1
SDC1-201ENST00000254351 SLC29A2Q14542 456 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 VPS72Q15906 364 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 GNPTABQ3T906 1256 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 ARMC3Q5W041 872 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms